Prediction of MHC class I binding peptides, using SVMHC. - Pierre Dönnes; Arne Elofsson (BMC Bioinform., 2002)

Using N-terminal targeting sequences, amino acid composition, and sequence motifs for predicting protein subcellular localizations. - Annette Höglund; Pierre Dönnes; Torsten Blum; Hans-Werner Adolph; Oliver Kohlbacher (German Conference on Bioinformatics, 2005)

Analysis of MHC-Peptide Binding Using Amino Acid Property-Based Decision Rules. - Jochen Supper; Pierre Dönnes; Oliver Kohlbacher (ICAPR (1), 2005)

Significantly Improved Prediction of Subcellular Localization by Integrating Text and Protein Sequence Data . - Annette Höglund; Torsten Blum; Scott Brady; Pierre Dönnes; John San Miguel; Matthew Rocheford; Oliver Kohlbacher; Hagit Shatkay (Pacific Symposium on Biocomputing, 2006)

MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition. - Annette Höglund; Pierre Dönnes; Torsten Blum; Hans-Werner Adolph; Oliver Kohlbacher (Bioinform., 2006)

SVMHC: a server for prediction of MHC-binding peptides. - Pierre Dönnes; Oliver Kohlbacher (Nucleic Acids Res., 2006)

SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data. - Hagit Shatkay; Annette Höglund; Scott Brady; Torsten Blum; Pierre Dönnes; Oliver Kohlbacher (Bioinform., 2007)

A Mathematical Framework for the Selection of an Optimal Set of Peptides for Epitope-Based Vaccines. - Nora C. Toussaint; Pierre Dönnes; Oliver Kohlbacher (PLoS Comput. Biol., 2008)

FRED - a framework for T-cell epitope detection. - Magdalena Feldhahn; Pierre Dönnes; Philipp Thiel; Oliver Kohlbacher (Bioinform., 2009)

miHA-match: computational detection of tissue-specific minor histocompatibility antigens. - Magdalena Feldhahn; Karin Schilbach; Pierre Dönnes; Hans-Georg Rammensee; Benjamin Schubert; Oliver Kohlbacher (BCB, 2012)

Population-specific design of de-immunized protein biotherapeutics. - Benjamin Schubert; Charlotta Schärfe; Pierre Dönnes; Thomas A. Hopf; Debora S. Marks; Oliver Kohlbacher (PLoS Comput. Biol., 2018)