MtbRegList, a database dedicated to the analysis of transcriptional regulation in Mycobacterium tuberculosis. - Pierre-Étienne Jacques; Alain L. Gervais; Mathieu Cantin; Jean-François Lucier; Guillaume Dallaire; Geneviève Drouin; Luc Gaudreau; Jean Goulet; Ryszard Brzezinski (Bioinform., 2005)

Detection of prokaryotic promoters from the genomic distribution of hexanucleotide pairs. - Pierre-Étienne Jacques; Sébastien Rodrigue; Luc Gaudreau; Jean Goulet; Ryszard Brzezinski (BMC Bioinform., 2006)

VAP: a versatile aggregate profiler for efficient genome-wide data representation and discovery. - Charles Coulombe; Christian Poitras; Alexei Nordell-Markovits; Mylène Brunelle; Marc-André Lavoie; François Robert 001; Pierre-Étienne Jacques (Nucleic Acids Res., 2014)

The epiGenomic Efficient Correlator (epiGeEC) tool allows fast comparison of user datasets with thousands of public epigenomic datasets. - Jonathan Laperle; Simon Hébert-Deschamps; Joanny Raby; David A. de Lima Morais; Michel Barrette; David Bujold; Charlotte Bastin; Marc-Antoine Robert; Jean-François Nadeau; Marie Harel; Alexei Nordell-Markovits; Alain Veilleux; et al. (Bioinform., 2019)

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data. - Jean-Christophe Lachance; Colton J. Lloyd; Jonathan M. Monk; Laurence Yang 001; Anand Sastry 002; Yara Seif; Bernhard O. Palsson; Sébastien Rodrigue; Adam M. Feist; Zachary A. King; Pierre-Étienne Jacques (PLoS Comput. Biol., 2019)

MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights. - Zhiqiang Pang; Jasmine Chong; Guangyan Zhou; David A. de Lima Morais; Le Chang; Michel Barrette; Carol Gauthier; Pierre-Étienne Jacques; Shuzhao Li; Jianguo Xia (Nucleic Acids Res., 2021)