Integration of Data Sources for Plant Genomics. - Pierre Larmande; Christine Tranchant-Dubreuil; L. Regnier; Isabelle Mougenot; Thérèse Libourel (ICEIS (1), 2006)

OryGenesDB: a database for rice reverse genetics. - Gaëtan Droc; Manuel Ruiz; Pierre Larmande; Andy Pereira; P. Piffanelli; Jean Benoît Morel; Anne Dievart; Brigitte Courtois; Emmanuel Guiderdoni; Christophe Périn (Nucleic Acids Res., 2006)

Mutualiser et partager, un défi pour la génomique fonctionnelle végétale. (Data integration challenges for plant functional genomics). - Pierre Larmande (2007)

Oryza Tag Line, a phenotypic mutant database for the Génoplante rice insertion line library. - Pierre Larmande; Céline Gay; Mathias Lorieux; Christophe Périn; Matthieu Bouniol; Gaëtan Droc; Christophe Sallaud; Pascual Perez; Isabelle Barnola; Corinne Biderre-Petit; Jérôme Martin; Jean Benoît Morel; et al. (Nucleic Acids Res., 2008)

OryGenesDB 2008 update: database interoperability for functional genomics of rice. - Gaëtan Droc; Christophe Périn; Sébastien Fromentin; Pierre Larmande (Nucleic Acids Res., 2009)

Semi-automatic Generation of Semantic Web Services for Relational Biological Databases. - Julien Wollbrett; Pierre Larmande; Manuel Ruiz (SWAT4LS, 2012)

Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases. - Julien Wollbrett; Pierre Larmande; Frédéric de Lamotte; Manuel Ruiz (BMC Bioinform., 2013)

Exposing French Agronomic Resources as Linked Open Data. - Aravind Venkatesan; Nordine El Hassouni; Florian Philippe; Cyril Pommier; Hadi Quesneville; Manuel Ruiz; Pierre Larmande (SWAT4LS, 2015)

Construction d'un gold standard pour des données agronomiques. - Imène Chentli; Pierre Larmande; Konstantin Todorov (IC, 2016)

Reusing the NCBO BioPortal Technology for Agronomy to Build AgroPortal. - Clément Jonquet; Anne Toulet; Elizabeth Arnaud; Sophie Aubin; Esther Dzalé Yeumo Kaboré; Vincent Emonet; John B. Graybeal; Mark A. Musen; Cyril Pommier; Pierre Larmande (ICBO/BioCreative, 2016)

AgroLD Indexing Tools with Ontological Annotations. - Stella Zevio; Nordine El Hassouni; Manuel Ruiz; Pierre Larmande (SWAT4LS, 2016)

Development of a knowledge system for Big Data: Case study to plant phenotyping data. - Ngoc Luyên Lê; Anne Tireau; Aravind Venkatesan; Pascal Neveu; Pierre Larmande (WIMS, 2016)

AgroLD APIAgroLD API. Une architecture orientée services pour l'extraction de connaissances dans la base de données liées AgroLD. - Gildas Tagny Ngompé; Aravind Venkatesan; Nordine El Hassouni; Manuel Ruiz; Pierre Larmande (Ingénierie des Systèmes d Inf., 2016)

Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. - Sarah Cohen Boulakia; Khalid Belhajjame; Olivier Collin; Jérôme Chopard; Christine Froidevaux; Alban Gaignard; Konrad Hinsen; Pierre Larmande; Yvan Le Bras; Frédéric Lemoine 002; Fabien Mareuil; Hervé Ménager; et al. (Future Gener. Comput. Syst., 2017)

Evaluating Named-Entity Recognition Approaches in Plant Molecular Biology. - Huy Do; Khoat Than; Pierre Larmande (MIWAI, 2018)

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. - Lisa C. Harper; Jacqueline D. Campbell; Ethalinda K. S. Cannon; Sook Jung; Monica Poelchau; Ramona L. Walls; Carson M. Andorf; Elizabeth Arnaud; Tanya Z. Berardini; Clayton L. Birkett; Steven B. Cannon; James D. Carson; et al. (Database J. Biol. Databases Curation, 2018)

AgroPortal: A vocabulary and ontology repository for agronomy. - Clément Jonquet; Anne Toulet; Elizabeth Arnaud; Sophie Aubin; Esther Dzalé Yeumo Kaboré; Vincent Emonet; John B. Graybeal; Marie-Angélique Laporte; Mark A. Musen; Valeria Pesce; Pierre Larmande (Comput. Electron. Agric., 2018)

Intégration de données multi-échelles et extraction de connaissances en agronomie : exemples et perspectives. (Multi-scale Data Integration and Knowledge Extraction in Agronomy: Examples and Prospects). - Pierre Larmande (2019)

AgroLD: un graphe de connaissances pour la caractérisation des mécanismes moléculaires complexes impactant le phénome des plantes. - Pierre Larmande; Gildas Tagny Ngompé; Manuel Ruiz (IC, 2019)

Progress in single-access information systems for wheat and rice crop improvement. - Armin Scheben; Chon-Kit Kenneth Chan; Locedie Mansueto; Ramil Mauleon; Pierre Larmande; Nickolai Alexandrov; Rod A. Wing; Kenneth L. McNally; Hadi Quesneville; David Edwards (Briefings Bioinform., 2019)

Benchmarking database systems for Genomic Selection implementation. - Yaw Nti-Addae; Dave Matthews; Victor Jun M. Ulat; Raza Syed; Guilhem Sempéré; Adrien Pétel; Jon Renner; Pierre Larmande; Valentin Guignon; Elizabeth Jones; Kelly Robbins (Database J. Biol. Databases Curation, 2019)

BrAPI - an application programming interface for plant breeding applications. - Peter Selby; Rafael Abbeloos; Jan Erik Backlund; Martin Basterrechea Salido; Guillaume Bauchet; Omar E. Benites-Alfaro; Clayton L. Birkett; Viana C. Calaminos; Pierre Carceller; Guillaume Cornut; Bruno Vasques Costa; Jeremy D. Edwards; et al. (Bioinform., 2019)

Candidate gene prioritization using graph embedding. - Quan Do; Pierre Larmande (RIVF, 2020)

AgroLD : une base de connaissances pour l'étude du phénome des plantes cultivées. - Pierre Larmande; Gildas Tagny Ngompé; Manuel Ruiz (EGC, 2021)

AgroLD: A Knowledge Graph for the Plant Sciences. - Pierre Larmande; Konstantin Todorov (ISWC, 2021)

PyRice: a Python package for querying Oryza sativa databases. - Quan Do; Bich Hai Ho; Pierre Larmande (Bioinform., 2021)

DLinker results for OAEI 2022. - Bill Gates Happi Happi; Géraud Fokou Pelap; Danai Symeonidou; Pierre Larmande (OM@ISWC, 2022)

Tutoriel sur DLinker : Un outil rapide de découverte d'entités similaires entre deux graphes de connaissances. - Bill Gates Happi Happi; Géraud Fokou Pelap; Danai Symeonidou; Pierre Larmande (IC, 2023)

AgroLD: a Knowledge Graph for the Plant Sciences. - Pierre Larmande; Bertrand Pitollat; Ndomassi Tando; Yann Pomie; Bill Happi; Valentin Guignon; Manuel Ruiz (SWAT4HCLS, 2023)

Integration of variation data through SPARQL Micro-Services. - Frederic Metereau; Franck Michel; Pierre Larmande; Guilhem Sempéré; Catherine Faron (SWAT4HCLS, 2024)

Fine-tuning des Modèles de Langage Large (LLMs) pour l'alignement d'entités au sein des graphes de connaissances (GCs). - Bill Gates Happi Happi; Géraud Fokou Pelap; Danai Symeonidou; Pierre Larmande (EGC, 2025)

Graph Embeddings Meet Link Keys Discovery for Entity Matching. - Chloé Khadija Jradeh; Ensiyeh Raoufi; Jérôme David; Pierre Larmande; François Scharffe; Konstantin Todorov; Cássia Trojahn (WWW, 2025)