CloneIt: finding cloning strategies, in-frame deletions and frameshifts. - Pierre Lindenbaum (Bioinform., 1998)

The Gene Wiki: community intelligence applied to human gene annotation. - Jon W. Huss III; Pierre Lindenbaum; Michael Martone; Donabel Roberts; Angel D. Pizarro; Faramarz Valafar; John B. Hogenesch; Andrew I. Su (Nucleic Acids Res., 2010)

Knime4Bio: a set of custom nodes for the interpretation of next-generation sequencing data with KNIME. - Pierre Lindenbaum; Solena Le Scouarnec; Vincent Portero; Richard Redon (Bioinform., 2011)

BioStar: An Online Question & Answer Resource for the Bioinformatics Community. - Laurence D. Parnell; Pierre Lindenbaum; Khader Shameer; Giovanni Marco Dall'Olio; Daniel C. Swan; Lars Juhl Jensen; Simon J. Cockell; Brent S. Pedersen; Mary E. Mangan; Christopher A. Miller 002; István Albert (PLoS Comput. Biol., 2011)

mod_bio: Apache modules for Next-Generation sequencing data. - Pierre Lindenbaum; Richard Redon (Bioinform., 2015)

bioalcidae, samjs and vcffilterjs: object-oriented formatters and filters for bioinformatics files. - Pierre Lindenbaum; Richard Redon (Bioinform., 2018)