MuGeN: Simultaneous Exploration of Multiple Genomes and Computer Analysis Results. - Mark Hoebeke; Pierre Nicolas; Philippe Bessières (Bioinform., 2003)

A model-based approach to selection of tag SNPs. - Pierre Nicolas; Fengzhu Sun; Lei M. Li (BMC Bioinform., 2006)

A Reversible Jump Markov Chain Monte Carlo Algorithm for Bacterial Promoter Motifs Discovery. - Pierre Nicolas; Anne-Sophie Tocquet; Vincent Miele; Florence Muri (J. Comput. Biol., 2006)

The Stem Cell Population of the Human Colon Crypt: Analysis via Methylation Patterns. - Pierre Nicolas; Kyoung-Mee Kim; Darryl Shibata; Simon Tavaré (PLoS Comput. Biol., 2007)

Transcriptional landscape estimation from tiling array data using a model of signal shift and drift. - Pierre Nicolas; Aurélie Leduc; Stéphane Robin; Simon Rasmussen; Hanne Jarmer; Philippe Bessières (Bioinform., 2009)

Pardiff: Inference of Differential Expression at Base-Pair Level from RNA-Seq Experiments. - Bogdan Mirauta; Pierre Nicolas; Hugues Richard (ICIAP Workshops, 2013)

MEMS packaging reliability assessment: Residual Gas Analysis of gaseous species trapped inside MEMS cavities. - Pierre-Louis Charvet; Pierre Nicolas; D. Bloch; B. Savornin (Microelectron. Reliab., 2013)

Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models. - Bogdan Mirauta; Pierre Nicolas; Hugues Richard (Bioinform., 2014)

Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT. - Thomas Lacroix; Sylvie Thérond; Marc Rugeri; Pierre Nicolas; Annie Gendrault; Valentin Loux; Jean-François Gibrat (Bioinform., 2016)

Genoscapist: online exploration of quantitative profiles along genomes via interactively customized graphical representations. - Sandra Dérozier; Pierre Nicolas; Ulrike Mäder; Cyprien Guérin (Bioinform., 2021)