PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides. - Pierre Thévenet; Yimin Shen; Julien Maupetit; Frédéric Guyon; Philippe Derreumaux; Pierre Tufféry (Nucleic Acids Res., 2012)

Exploring a Sub-optimal Hidden Markov Model Sampling Approach for De Novo Peptide Structure Modeling. - Pierre Thévenet; Pierre Tufféry (BIOINFORMATICS, 2014)

PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces. - Adrien Saladin; Julien Rey; Pierre Thévenet; Martin Zacharias; Gautier Moroy; Pierre Tufféry (Nucleic Acids Res., 2014)

A critical assessment of hidden markov model sub-optimal sampling strategies applied to the generation of peptide 3D models. - Alexis Lamiable; Pierre Thévenet; Pierre Tufféry (J. Comput. Chem., 2016)

PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex. - Alexis Lamiable; Pierre Thévenet; Julien Rey; Marek Vavrusa; Philippe Derreumaux; Pierre Tufféry (Nucleic Acids Res., 2016)