Modeling of Tumor Conspicuity In Hepatic CT Images: Combined Compartment and Vascular Models. - Marek Kretowski; Pierrick Coupé; Johanne Bézy-Wendling (ISBI, 2004)

3D Freehand Ultrasound Reconstruction Based on Probe Trajectory. - Pierrick Coupé; Pierre Hellier; Noura Azzabou; Christian Barillot (MICCAI, 2005)

Fast Non Local Means Denoising for 3D MR Images. - Pierrick Coupé; Pierre Yger; Christian Barillot (MICCAI (2), 2006)

Image Guidance in Neurosurgical Procedures, the "Visages" Point of View. - Christian Barillot; Pierrick Coupé; Omar El-Ganaoui; Bernard Gibaud; Pierre Hellier; Pierre Jannin; Perrine Paul; Sylvain Prima; Nicolas Wiest-Daesslé; Xavier Morandi (ISBI, 2007)

A Probabilistic Objective Function for 3d Rigid Registration of Intraoperative Us and Preoperative MR Brain Images. - Pierrick Coupé; Pierre Hellier; Xavier Morandi; Christian Barillot (ISBI, 2007)

Non-Local Means Variants for Denoising of Diffusion-Weighted and Diffusion Tensor MRI. - Nicolas Wiest-Daesslé; Sylvain Prima; Pierrick Coupé; Sean Patrick Morrissey; Christian Barillot (MICCAI (2), 2007)

Bayesian Non-local Means Filter, Image Redundancy and Adaptive Dictionaries for Noise Removal. - Charles Kervrann; Jérôme Boulanger; Pierrick Coupé (SSVM, 2007)

Probe trajectory interpolation for 3D reconstruction of freehand ultrasound. - Pierrick Coupé; Pierre Hellier; Xavier Morandi; Christian Barillot (Medical Image Anal., 2007)

Simulation of Biphasic CT Findings in Hepatic Cellular Carcinoma by a Two-Level Physiological Model. - Marek Kretowski; Johanne Bézy-Wendling; Pierrick Coupé (IEEE Trans. Biomed. Eng., 2007)

Bayesian non local means-based speckle filtering. - Pierrick Coupé; Pierre Hellier; Charles Kervrann; Christian Barillot (ISBI, 2008)

Acoustic shadows detection, application to accurate reconstruction of 3D intraoperative ultrasound. - Pierre Hellier; Pierrick Coupé; Pierre Meyer; Xavier Morandi; D. Louis Collins (ISBI, 2008)

Rician Noise Removal by Non-Local Means Filtering for Low Signal-to-Noise Ratio MRI: Applications to DT-MRI. - Nicolas Wiest-Daesslé; Sylvain Prima; Pierrick Coupé; Sean Patrick Morrissey; Christian Barillot (MICCAI (2), 2008)

3D Wavelet Subbands Mixing for Image Denoising. - Pierrick Coupé; Pierre Hellier; Sylvain Prima; Charles Kervrann; Christian Barillot (Int. J. Biomed. Imaging, 2008)

An Optimized Blockwise Nonlocal Means Denoising Filter for 3-D Magnetic Resonance Images. - Pierrick Coupé; Pierre Yger; Sylvain Prima; Pierre Hellier; Charles Kervrann; Christian Barillot (IEEE Trans. Medical Imaging, 2008)

Brain shift compensation in image-guided neurosurgery based on 3-D ultrasound. (Méthode de compensation des déformations cérébrales par imagerie ultrasonore intraopératoire pour la neurochirurgie guidée par l'image). - Pierrick Coupé (2008)

An Object-Based Method for Rician Noise Estimation in MR Images. - Pierrick Coupé; José V. Manjón; Elias Gedamu; Douglas L. Arnold; Montserrat Robles; D. Louis Collins (MICCAI (1), 2009)

Nonlocal Means-Based Speckle Filtering for Ultrasound Images. - Pierrick Coupé; Pierre Hellier; Charles Kervrann; Christian Barillot (IEEE Trans. Image Process., 2009)

Intraoperative ultrasonography for the correction of brainshift based on the matching of hyperechogenic structures. - Pierrick Coupé; Pierre Hellier; Xavier Morandi; Christian Barillot (ISBI, 2010)

Robust 3D Reconstruction and Mean-Shift Clustering of Motoneurons from Serial Histological Images. - Nicolas Guizard; Pierrick Coupé; Nicolas Stifani; Stefano Stifani; D. Louis Collins (MIAR, 2010)

Nonlocal Patch-Based Label Fusion for Hippocampus Segmentation. - Pierrick Coupé; José V. Manjón; Vladimir S. Fonov; Jens C. Pruessner; Montserrat Robles; D. Louis Collins (MICCAI (3), 2010)

MRI Superresolution Using Self-Similarity and Image Priors. - José V. Manjón; Pierrick Coupé; Antonio Buades; D. Louis Collins; Montserrat Robles (Int. J. Biomed. Imaging, 2010)

Robust Rician noise estimation for MR images. - Pierrick Coupé; José V. Manjón; Elias Gedamu; Douglas L. Arnold; Montserrat Robles; D. Louis Collins (Medical Image Anal., 2010)

An automatic geometrical and statistical method to detect acoustic shadows in intraoperative ultrasound brain images. - Pierre Hellier; Pierrick Coupé; Xavier Morandi; D. Louis Collins (Medical Image Anal., 2010)

Non-local MRI upsampling. - José V. Manjón; Pierrick Coupé; Antonio Buades; Vladimir S. Fonov; D. Louis Collins; Montserrat Robles (Medical Image Anal., 2010)

Simultaneous Segmentation and Grading of Hippocampus for Patient Classification with Alzheimer's Disease. - Pierrick Coupé; Simon F. Eskildsen; José V. Manjón; Vladimir S. Fonov; D. Louis Collins (MICCAI (3), 2011)

Real time ultrasound image denoising. - Fernanda Palhano Xavier de Fontes; Guillermo Andrade-Barroso; Pierrick Coupé; Pierre Hellier (J. Real Time Image Process., 2011)

Patch-based segmentation using expert priors: Application to hippocampus and ventricle segmentation. - Pierrick Coupé; José V. Manjón; Vladimir S. Fonov; Jens C. Pruessner; Montserrat Robles; D. Louis Collins (NeuroImage, 2011)

Appearance-based modeling for segmentation of hippocampus and amygdala using multi-contrast MR imaging. - Shiyan Hu 003; Pierrick Coupé; Jens C. Pruessner; D. Louis Collins (NeuroImage, 2011)

A New Framework for Analyzing Structural Volume Changes of Longitudinal Brain MRI Data. - Bérengère Aubert-Broche; Vladimir S. Fonov; Daniel García-Lorenzo; Abderazzak Mouiha; Nicolas Guizard; Pierrick Coupé; Simon F. Eskildsen; D. Louis Collins (STIA, 2012)

Validation of a hybrid Doppler ultrasound vessel-based registration algorithm for neurosurgery. - Sean Jy-Shyang Chen; Ingerid Reinertsen; Pierrick Coupé; Charles X. B. Yan; Laurence Mercier; Rolando Del Maestro; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2012)

3D Rigid Registration of Intraoperative Ultrasound and Preoperative MR Brain Images Based on Hyperechogenic Structures. - Pierrick Coupé; Pierre Hellier; Xavier Morandi; Christian Barillot (Int. J. Biomed. Imaging, 2012)

A CANDLE for a deeper in vivo insight. - Pierrick Coupé; Martin Munz; José V. Manjón; Edward S. Ruthazer; D. Louis Collins (Medical Image Anal., 2012)

New methods for MRI denoising based on sparseness and self-similarity. - José V. Manjón; Pierrick Coupé; Antonio Buades; D. Louis Collins; Montserrat Robles (Medical Image Anal., 2012)

Simultaneous segmentation and grading of anatomical structures for patient's classification: Application to Alzheimer's disease. - Pierrick Coupé; Simon F. Eskildsen; José V. Manjón; Vladimir S. Fonov; D. Louis Collins (NeuroImage, 2012)

BEaST: Brain extraction based on nonlocal segmentation technique. - Simon F. Eskildsen; Pierrick Coupé; Vladimir S. Fonov; José V. Manjón; Kelvin K. Leung; Nicolas Guizard; Shafik N. Wassef; Lasse Riis Østergaard; D. Louis Collins (NeuroImage, 2012)

Automated segmentation of basal ganglia and deep brain structures in MRI of Parkinson's disease. - Claire Haegelen; Pierrick Coupé; Vladimir S. Fonov; Nicolas Guizard; Pierre Jannin; Xavier Morandi; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2013)

A new method for structural volume analysis of longitudinal brain MRI data and its application in studying the growth trajectories of anatomical brain structures in childhood. - Bérengère Aubert-Broche; Vladimir S. Fonov; Daniel García-Lorenzo; Abderazzak Mouiha; Nicolas Guizard; Pierrick Coupé; Simon F. Eskildsen; D. Louis Collins (NeuroImage, 2013)

Collaborative patch-based super-resolution for diffusion-weighted images. - Pierrick Coupé; José V. Manjón; Maxime Chamberland; Maxime Descoteaux; Bassem Hiba (NeuroImage, 2013)

Prediction of Alzheimer's disease in subjects with mild cognitive impairment from the ADNI cohort using patterns of cortical thinning. - Simon F. Eskildsen; Pierrick Coupé; Daniel García-Lorenzo; Vladimir S. Fonov; Jens C. Pruessner; D. Louis Collins (NeuroImage, 2013)

Volumetric analysis of medial temporal lobe structures in brain development from childhood to adolescence. - Shiyan Hu 003; Jens C. Pruessner; Pierrick Coupé; D. Louis Collins (NeuroImage, 2013)

Segmentation of MR images via discriminative dictionary learning and sparse coding: Application to hippocampus labeling. - Tong Tong 001; Robin Wolz; Pierrick Coupé; Joseph V. Hajnal; Daniel Rueckert (NeuroImage, 2013)

Anatomically Constrained Weak Classifier Fusion for Early Detection of Alzheimer's Disease. - Mawulawoé Komlagan; Vinh-Thong Ta 002; Xingyu Pan; Jean-Philippe Domenger; D. Louis Collins; Pierrick Coupé (MLMI, 2014)

Optimized PatchMatch for Near Real Time and Accurate Label Fusion. - Vinh-Thong Ta 002; Rémi Giraud; D. Louis Collins; Pierrick Coupé (MICCAI (3), 2014)

Nonlocal Intracranial Cavity Extraction. - José V. Manjón; Simon F. Eskildsen; Pierrick Coupé; José E. Romero; D. Louis Collins; Montserrat Robles (Int. J. Biomed. Imaging, 2014)

Patch-Based Segmentation from MP2RAGE Images: Comparison to Conventional Techniques. - Erhard T. Næss-Schmidt; Anna Tietze; Irene K. Mikkelsen; Mikkel V. Petersen; Jakob Udby Blicher; Pierrick Coupé; José V. Manjón; Simon F. Eskildsen (Patch-MI@MICCAI, 2015)

MRI noise estimation and denoising using non-local PCA. - José V. Manjón; Pierrick Coupé; Antonio Buades (Medical Image Anal., 2015)

Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge. - Esther E. Bron; Marion Smits; Wiesje M. van der Flier; Hugo Vrenken; Frederik Barkhof; Philip Scheltens; Janne M. Papma; Rebecca M. E. Steketee; Carolina Méndez Orellana; Rozanna Meijboom; Madalena Pinto; Joana R. Meireles; et al. (NeuroImage, 2015)

Sparse-Based Morphometry: Principle and Application to Alzheimer's Disease. - Pierrick Coupé; Charles-Alban Deledalle; Charles Dossal; Michèle Allard (Patch-MI@MICCAI, 2016)

Patch-Based DTI Grading: Application to Alzheimer's Disease Classification. - Kilian Hett; Vinh-Thong Ta 002; Rémi Giraud; Mary Mondino; José V. Manjón; Pierrick Coupé (Patch-MI@MICCAI, 2016)

HIST: HyperIntensity Segmentation Tool. - José V. Manjón; Pierrick Coupé; Parnesh Raniga; Ying Xia; Jurgen Fripp; Olivier Salvado (Patch-MI@MICCAI, 2016)

Non-local MRI Library-Based Super-Resolution: Application to Hippocampus Subfield Segmentation. - José E. Romero; Pierrick Coupé; José V. Manjón (Patch-MI@MICCAI, 2016)

High Resolution Hippocampus Subfield Segmentation Using Multispectral Multiatlas Patch-Based Label Fusion. - José E. Romero; Pierrick Coupé; José V. Manjón (Patch-MI@MICCAI, 2016)

Automatic thalamus and hippocampus segmentation from MP2RAGE: comparison of publicly available methods and implications for DTI quantification. - Erhard T. Næss-Schmidt; Anna Tietze; Jakob Udby Blicher; Mikkel V. Petersen; Irene K. Mikkelsen; Pierrick Coupé; José V. Manjón; Simon F. Eskildsen (Int. J. Comput. Assist. Radiol. Surg., 2016)

volBrain: An Online MRI Brain Volumetry System. - José V. Manjón; Pierrick Coupé (Frontiers Neuroinformatics, 2016)

Non Local Spatial and Angular Matching: Enabling higher spatial resolution diffusion MRI datasets through adaptive denoising. - Samuel St-Jean; Pierrick Coupé; Maxime Descoteaux (Medical Image Anal., 2016)

An Optimized PatchMatch for multi-scale and multi-feature label fusion. - Rémi Giraud; Vinh-Thong Ta 002; Nicolas Papadakis; José V. Manjón; D. Louis Collins; Pierrick Coupé (NeuroImage, 2016)

Adaptive Fusion of Texture-Based Grading: Application to Alzheimer's Disease Detection. - Kilian Hett; Vinh-Thong Ta 002; José V. Manjón; Pierrick Coupé (Patch-MI@MICCAI, 2017)

Hippocampus Subfield Segmentation Using a Patch-Based Boosted Ensemble of Autocontext Neural Networks. - José V. Manjón; Pierrick Coupé (Patch-MI@MICCAI, 2017)

Early Prediction of Alzheimer's Disease with Non-local Patch-Based Longitudinal Descriptors. - Gerard Sanroma; Víctor Andrea; Oualid M. Benkarim; José V. Manjón; Pierrick Coupé; Oscar Camara 001; Gemma Piella; Miguel Ángel González Ballester (Patch-MI@MICCAI, 2017)

CERES: A new cerebellum lobule segmentation method. - José E. Romero; Pierrick Coupé; Rémi Giraud; Vinh-Thong Ta 002; Vladimir S. Fonov; Min Tae M. Park; M. Mallar Chakravarty; Aristotle N. Voineskos; José V. Manjón (NeuroImage, 2017)

HIPS: A new hippocampus subfield segmentation method. - José E. Romero; Pierrick Coupé; José V. Manjón (NeuroImage, 2017)

A comparison of accurate automatic hippocampal segmentation methods. - Azar Zandifar; Vladimir S. Fonov; Pierrick Coupé; Jens C. Pruessner; D. Louis Collins (NeuroImage, 2017)

SuperPatchMatch: An Algorithm for Robust Correspondences Using Superpixel Patches. - Rémi Giraud; Vinh-Thong Ta 002; Aurélie Bugeau; Pierrick Coupé; Nicolas Papadakis (IEEE Trans. Image Process., 2017)

Patch-based MRI Analysis: From voxel to knowledge. (Analyse par patchs des IRM : du voxel à la connaissance). - Pierrick Coupé (2018)

LesionBrain: An Online Tool for White Matter Lesion Segmentation. - Pierrick Coupé; Thomas Tourdias; Pierre Linck; José E. Romero; José V. Manjón (Patch-MI@MICCAI, 2018)

Graph of Brain Structures Grading for Early Detection of Alzheimer's Disease. - Kilian Hett; Vinh-Thong Ta 002; José V. Manjón; Pierrick Coupé (MICCAI (3), 2018)

Graph of Hippocampal Subfields Grading for Alzheimer's Disease Prediction. - Kilian Hett; Vinh-Thong Ta 002; José V. Manjón; Pierrick Coupé (MLMI@MICCAI, 2018)

MRI Denoising Using Deep Learning. - José V. Manjón; Pierrick Coupé (Patch-MI@MICCAI, 2018)

Adaptive fusion of texture-based grading for Alzheimer's disease classification. - Kilian Hett; Vinh-Thong Ta 002; José V. Manjón; Pierrick Coupé; Alzheimer's Disease Neuroimaging Initiative (Comput. Medical Imaging Graph., 2018)

MRI white matter lesion segmentation using an ensemble of neural networks and overcomplete patch-based voting. - José V. Manjón; Pierrick Coupé; Parnesh Raniga; Ying Xia; Patricia M. Desmond; Jurgen Fripp; Olivier Salvado (Comput. Medical Imaging Graph., 2018)

Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images. - Aaron Carass; Jennifer L. Cuzzocreo; Shuo Han 001; Carlos R. Hernandez-Castillo; Paul E. Rasser; Melanie Ganz; Vincent Beliveau; Jose Dolz; Ismail Ben Ayed; Christian Desrosiers; Benjamin Thyreau; José E. Romero; et al. (NeuroImage, 2018)

Corrigendum to "HIPS: A new hippocampus subfield segmentation method" [NeuroImage 163 (2017) 286-295]. - José E. Romero; Pierrick Coupé; José V. Manjón (NeuroImage, 2018)

No Structural Differences Are Revealed by VBM in 'De Novo' Parkinsonian Patients. - Verónica Muñoz Ramírez; Florence Forbes; Pierrick Coupé; Michel Dojat (MedInfo, 2019)

AssemblyNet: A Novel Deep Decision-Making Process for Whole Brain MRI Segmentation. - Pierrick Coupé; Boris Mansencal; Michaël Clément; Rémi Giraud; Baudouin Denis de Senneville; Vinh-Thong Ta 002; Vincent Lepetit; José V. Manjón (MICCAI (3), 2019)

An Optimized PatchMatch for Multi-scale and Multi-feature Label Fusion. - Rémi Giraud; Vinh-Thong Ta 002; Nicolas Papadakis; José V. Manjón; D. Louis Collins; Pierrick Coupé; Alzheimer's Disease Neuroimaging Initiative (CoRR, 2019)

Multi-scale Graph-based Grading for Alzheimer's Disease Prediction. - Kilian Hett; Vinh-Thong Ta 002; José V. Manjón; Pierrick Coupé (CoRR, 2019)

MRI denoising using Deep Learning and Non-local averaging. - José V. Manjón; Pierrick Coupé (CoRR, 2019)

Tensor-Based Grading: A Novel Patch-Based Grading Approach for the Analysis Of Deformation Fields in Huntington's Disease. - Kilian Hett; Hans J. Johnson; Pierrick Coupé; Jane S. Paulsen; Jeffrey D. Long; Ipek Oguz (ISBI, 2020)

Blind MRI Brain Lesion Inpainting Using Deep Learning. - José V. Manjón; José E. Romero; Roberto Vivó Hernando; Gregorio Rubio; Fernando Aparici-Robles; María de la Iglesia-Vayá; Thomas Tourdias; Pierrick Coupé (SASHIMI@MICCAI, 2020)

Accuracy of MRI Classification Algorithms in a Tertiary Memory Center Clinical Routine Cohort. - Alexandre Morin; Jorge Samper-González; Anne Bertrand; Sebastian Ströer; Didier Dormont; Aline Mendes; Pierrick Coupé; Jamila Ahdidan; Marcel Lévy; Dalila Samri; Harald Hampel; Bruno Dubois; et al. (CoRR, 2020)

RegQCNET: Deep Quality Control for Image-to-template Brain MRI Registration. - Baudouin Denis de Senneville; José V. Manjón; Pierrick Coupé (CoRR, 2020)

Deep correction of breathing-related artifacts in MR-thermometry. - Baudouin Denis de Senneville; Pierrick Coupé; Mario Ries; Laurent Facq; Chrit T. W. Moonen (CoRR, 2020)

Towards broader generalization of deep learning methods for multiple sclerosis lesion segmentation. - Reda Abdellah Kamraoui; Vinh-Thong Ta 002; Thomas Tourdias; Boris Mansencal; José V. Manjón; Pierrick Coupé (CoRR, 2020)

AssemblyNet: A large ensemble of CNNs for 3D whole brain MRI segmentation. - Pierrick Coupé; Boris Mansencal; Michaël Clément; Rémi Giraud; Baudouin Denis de Senneville; Vinh-Thong Ta 002; Vincent Lepetit; José V. Manjón (NeuroImage, 2020)

POPCORN: Progressive Pseudo-Labeling with Consistency Regularization and Neighboring. - Reda Abdellah Kamraoui; Vinh-Thong Ta 002; Nicolas Papadakis; Fanny Compaire; José V. Manjón; Pierrick Coupé (MICCAI (2), 2021)

Deep Grading Based on Collective Artificial Intelligence for AD Diagnosis and Prognosis. - Huy-Dung Nguyen; Michaël Clément; Boris Mansencal; Pierrick Coupé (iMIMIC/TDA4MedicalData@MICCAI, 2021)

Deep correction of breathing-related artifacts in real-time MR-thermometry. - Baudouin Denis de Senneville; Pierrick Coupé; Mario Ries; Laurent Facq; Chrit T. W. Moonen (Comput. Medical Imaging Graph., 2021)

Multi-scale graph-based grading for Alzheimer's disease prediction. - Kilian Hett; Vinh-Thong Ta 002; Ipek Oguz; José V. Manjón; Pierrick Coupé (Medical Image Anal., 2021)

Interpretable Differential Diagnosis for Alzheimer's Disease and Frontotemporal Dementia. - Huy-Dung Nguyen; Michaël Clément; Boris Mansencal; Pierrick Coupé (MICCAI (1), 2022)

Deep Anomaly Generation: An Image Translation Approach of Synthesizing Abnormal Banded Chromosome Images. - Lukas Uzolas; Javier Rico; Pierrick Coupé; Juan C. SanMiguel; György Cserey (IEEE Access, 2022)

Longitudinal detection of new MS lesions using Deep Learning. - Reda Abdellah Kamraoui; Boris Mansencal; José V. Manjón; Pierrick Coupé (CoRR, 2022)

vol2Brain: A New Online Pipeline for Whole Brain MRI Analysis. - José V. Manjón; José E. Romero; Roberto Vivó Hernando; Gregorio Rubio; Fernando Aparici-Robles; María de la Iglesia-Vayá; Pierrick Coupé (Frontiers Neuroinformatics, 2022)

DeepLesionBrain: Towards a broader deep-learning generalization for multiple sclerosis lesion segmentation. - Reda Abdellah Kamraoui; Vinh-Thong Ta 002; Thomas Tourdias; Boris Mansencal; José V. Manjón; Pierrick Coupé (Medical Image Anal., 2022)

3D Transformer Based on Deformable Patch Location for Differential Diagnosis Between Alzheimer's Disease and Frontotemporal Dementia. - Huy-Dung Nguyen; Michaël Clément; Boris Mansencal; Pierrick Coupé (MLMI@MICCAI (2), 2023)

Brain Structure Ages - A new biomarker for multi-disease classification. - Huy-Dung Nguyen; Michaël Clément; Boris Mansencal; Pierrick Coupé (CoRR, 2023)

Towards better interpretable and generalizable AD detection using collective artificial intelligence. - Huy-Dung Nguyen; Michaël Clément; Boris Mansencal; Pierrick Coupé (Comput. Medical Imaging Graph., 2023)

Deep grading for MRI-based differential diagnosis of Alzheimer's disease and Frontotemporal dementia. - Huy-Dung Nguyen; Michaël Clément; Vincent Planche; Boris Mansencal; Pierrick Coupé (Artif. Intell. Medicine, 2023)

Adapted nnU-Net: A Robust Baseline for Cross-Modality Synthesis and Medical Image Inpainting. - Arthur Longuefosse; Edern Le Bot; Baudouin Denis de Senneville; Rémi Giraud; Boris Mansencal; Pierrick Coupé; Pascal Desbarats; Fabien Baldacci (SASHIMI@MICCAI, 2024)

Preface for International Conference on Medical Imaging with Deep Learning 2024. - Ninon Burgos; Caroline Petitjean; Maria Vakalopoulou; Stergios Christodoulidis; Pierrick Coupé; Hervé Delingette; Carole Lartizien; Diana Mateus (MIDL, 2024)

Unsupervised Deep Learning Method for Bias Correction. - Maria Perez-Caballero; Sergio Morell-Ortega; Marina Ruiz-Perez; Pierrick Coupé; José V. Manjón (MIDL, 2024)

DeepThalamus: A novel deep learning method for automatic segmentation of brain thalamic nuclei from multimodal ultra-high resolution MRI. - Marina Ruiz-Perez; Sergio Morell-Ortega; Marien Gadea; Roberto Vivó Hernando; Gregorio Rubio; Fernando Aparici-Robles; María de la Iglesia-Vayá; Thomas Tourdias; Pierrick Coupé; José V. Manjón (CoRR, 2024)

DeepCERES: A Deep learning method for cerebellar lobule segmentation using ultra-high resolution multimodal MRI. - Sergio Morell-Ortega; Marina Ruiz-Perez; Marien Gadea; Roberto Vivó Hernando; Gregorio Rubio; Fernando Aparici-Robles; María de la Iglesia-Vayá; Gwenaelle Catheline; Pierrick Coupé; José V. Manjón (CoRR, 2024)

DeepCERES: A deep learning method for cerebellar lobule segmentation using ultra-high resolution multimodal MRI. - Sergio Morell-Ortega; Marina Ruiz-Perez; Marien Gadea; Roberto Vivó Hernando; Gregorio Rubio; Fernando Aparici-Robles; María de la Iglesia-Vayá; Gwenaelle Catheline; Boris Mansencal; Pierrick Coupé; José V. Manjón (NeuroImage, 2025)

Ultra-high resolution multimodal MRI dense labelled holistic brain atlas. - José V. Manjón; Sergio Morell-Ortega; Marina Ruiz-Perez; Boris Mansencal; Edern Le Bot; Marien Gadea; Enrique Lanuza; Gwenaelle Catheline; Thomas Tourdias; Vincent Planche; Rémi Giraud; Denis Rivière; et al. (CoRR, 2025)

Lifespan tree of brain anatomy: diagnostic values for motor and cognitive neurodegenerative diseases. - Pierrick Coupé; Boris Mansencal; José V. Manjón; Patrice Péran; Wassilios G. Meissner; Thomas Tourdias; Vincent Planche (CoRR, 2025)

FLAIRBrainSeg: Fine-grained brain segmentation using FLAIR MRI only. - Edern Le Bot; Rémi Giraud; Boris Mansencal; Thomas Tourdias; José V. Manjón; Pierrick Coupé (CoRR, 2025)

An Explainable Diagnostic Framework for Neurodegenerative Dementias via Reinforcement-Optimized LLM Reasoning. - Andrew Zamai; Nathanaël Fijalkow; Boris Mansencal; Laurent Simon 001; Eloi Navet; Pierrick Coupé (CoRR, 2025)

petBrain: A New Pipeline for Amyloid, Tau Tangles and Neurodegeneration Quantification Using PET and MRI. - Pierrick Coupé; Boris Mansencal; Floréal Morandat; Sergio Morell-Ortega; Nicolas Villain; José V. Manjón; Vincent Planche (CoRR, 2025)