A new generation of JASPAR, the open-access repository for transcription factor binding site profiles. - Dominique Vlieghe; Albin Sandelin; Pieter J. De Bleser; Kris Vleminckx; Wyeth W. Wasserman; Frans van Roy; Boris Lenhard (Nucleic Acids Res., 2006)

ORegAnno: an open-access community-driven resource for regulatory annotation. - Obi L. Griffith; Stephen B. Montgomery; Bridget Bernier; Bryan Chu; Katayoon Kasaian; Stein Aerts; Shaun Mahony; Monica C. Sleumer; Mikhail Bilenky; Maximilian Haeussler; Malachi Griffith; Steven M. Gallo; et al. (Nucleic Acids Res., 2008)

ConTra: a promoter alignment analysis tool for identification of transcription factor binding sites across species. - Bart Hooghe; Paco Hulpiau; Frans van Roy; Pieter J. De Bleser (Nucleic Acids Res., 2008)

ConTra v2: a tool to identify transcription factor binding sites across species, update 2011. - Stefan Broos; Paco Hulpiau; Jeroen Galle; Bart Hooghe; Frans van Roy; Pieter J. De Bleser (Nucleic Acids Res., 2011)

PhysBinder: improving the prediction of transcription factor binding sites by flexible inclusion of biophysical properties. - Stefan Broos; Arne Soete; Bart Hooghe; Raymond Moran; Frans van Roy; Pieter J. De Bleser (Nucleic Acids Res., 2013)

ConTra v3: a tool to identify transcription factor binding sites across species, update 2017. - Lukasz Kreft; Arne Soete; Paco Hulpiau; Alexander Botzki; Yvan Saeys; Pieter J. De Bleser (Nucleic Acids Res., 2017)