Decidable Properties for Regular Cellular Automata. - Pietro di Lena (IFIP TCS, 2006)

Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps. - Marco Vassura; Luciano Margara; Pietro di Lena; Filippo Medri; Piero Fariselli; Rita Casadio (WABI, 2007)

On Computing the Topological Entropy of One-sided Cellular Automata. - Pietro di Lena (J. Cell. Autom., 2007)

Row Subshifts and Topological Entropy of Cellular Automata. - Pietro di Lena; Luciano Margara (J. Cell. Autom., 2007)

A New Protein Representation Based on Fragment Contacts: Towards an Improvement of Contact Maps Predictions. - Pietro di Lena; Luciano Margara; Marco Vassura; Piero Fariselli; Rita Casadio (CIBB, 2008)

Classification of directional dynamics for additive cellular automata. - Alberto Dennunzio; Pietro di Lena; Enrico Formenti; Luciano Margara (JAC, 2008)

FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps. - Marco Vassura; Luciano Margara; Pietro di Lena; Filippo Medri; Piero Fariselli; Rita Casadio (Bioinform., 2008)

Computational complexity of dynamical systems: The case of cellular automata. - Pietro di Lena; Luciano Margara (Inf. Comput., 2008)

Reconstruction of 3D Structures From Protein Contact Maps. - Marco Vassura; Luciano Margara; Pietro di Lena; Filippo Medri; Piero Fariselli; Rita Casadio (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

Undecidable Properties of Limit Set Dynamics of Cellular Automata. - Pietro di Lena; Luciano Margara (STACS, 2009)

On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices. - Pietro di Lena; Piero Fariselli; Luciano Margara; Marco Vassura; Rita Casadio (WABI, 2009)

On the Reconstruction of Three-dimensional Protein Structures from Contact Maps. - Pietro di Lena; Marco Vassura; Luciano Margara; Piero Fariselli; Rita Casadio (Algorithms, 2009)

On the directional dynamics of additive cellular automata. - Alberto Dennunzio; Pietro di Lena; Enrico Formenti; Luciano Margara (Theor. Comput. Sci., 2009)

Fast overlapping of protein contact maps by alignment of eigenvectors. - Pietro di Lena; Piero Fariselli; Luciano Margara; Marco Vassura; Rita Casadio (Bioinform., 2010)

Optimal global alignment of signals by maximization of Pearson correlation. - Pietro di Lena; Luciano Margara (Inf. Process. Lett., 2010)

On the undecidability of the limit behavior of Cellular Automata. - Pietro di Lena; Luciano Margara (Theor. Comput. Sci., 2010)

Divide and Conquer Strategies for Protein Structure Prediction. - Pietro di Lena; Piero Fariselli; Luciano Margara; Marco Vassura; Rita Casadio (Mathematical Approaches to Polymer Sequence Analysis and Related Problems, 2011)

Blurring contact maps of thousands of proteins: what we can learn by reconstructing 3D structure. - Marco Vassura; Pietro di Lena; Luciano Margara; Maria Mirto; Giovanni Aloisio; Piero Fariselli; Rita Casadio (BioData Min., 2011)

Is There an Optimal Substitution Matrix for Contact Prediction with Correlated Mutations? - Pietro di Lena; Piero Fariselli; Luciano Margara; Marco Vassura; Rita Casadio (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Deep Spatio-Temporal Architectures and Learning for Protein Structure Prediction. - Pietro Di Lena; Pierre Baldi; Ken Nagata (NIPS, 2012)

Deep architectures for protein contact map prediction. - Pietro di Lena; Ken Nagata; Pierre Baldi (Bioinform., 2012)

Strictly Temporally Periodic Points in Cellular Automata - Alberto Dennunzio; Pietro di Lena; Luciano Margara (AUTOMATA & JAC, 2012)

On the Undecidability of Attractor Properties for Cellular Automata. - Pietro di Lena; Luciano Margara (Fundam. Informaticae, 2012)

MIMO: an efficient tool for molecular interaction maps overlap. - Pietro Di Lena; Gang Wu; Pier Luigi Martelli; Rita Casadio; Christine Nardini (BMC Bioinform., 2013)

Periodic Orbits and Dynamical Complexity in Cellular Automata. - Alberto Dennunzio; Pietro Di Lena; Enrico Formenti; Luciano Margara (Fundam. Informaticae, 2013)

Nondeterministic Cellular Automata. - Pietro Di Lena; Luciano Margara (Inf. Sci., 2014)

Mechanotransduction map: simulation model, molecular pathway, gene set. - Jennifer E. Dent; Valentina Devescovi; Han Li; Pietro Di Lena; Youtao Lu; Yuanhua Liu; Christine Nardini (Bioinform., 2015)

GOTA: GO term annotation of biomedical literature. - Pietro di Lena; Giacomo Domeniconi; Luciano Margara; Gianluca Moro (BMC Bioinform., 2015)

NET-GE: a web-server for NETwork-based human gene enrichment. - Samuele Bovo; Pietro Di Lena; Pier Luigi Martelli; Piero Fariselli; Rita Casadio (Bioinform., 2016)

Equicontinuity and Sensitivity of Nondeterministic Cellular Automata. - Pietro Di Lena (AUTOMATA, 2017)

In-vehicle Human Machine Interface: An Approach to Enhance Eco-Driving Behaviors. - Pietro Di Lena; Silvia Mirri; Catia Prandi; Paola Salomoni; Giovanni Delnevo (SmartObject@IUI, 2017)

Missing value estimation methods for DNA methylation data. - Pietro Di Lena; Claudia Sala; Andrea Prodi; Christine Nardini (Bioinform., 2019)

On combining Big Data and machine learning to support eco-driving behaviours. - Giovanni Delnevo; Pietro Di Lena; Silvia Mirri; Catia Prandi; Paola Salomoni (J. Big Data, 2019)

Methylation data imputation performances under different representations and missingness patterns. - Pietro Di Lena; Claudia Sala; Andrea Prodi; Christine Nardini (BMC Bioinform., 2020)

Topological dynamics of Nondeterministic Cellular Automata. - Pietro Di Lena (Inf. Comput., 2020)

Fold recognition by scoring protein maps using the congruence coefficient. - Pietro Di Lena; Pierre Baldi (Bioinform., 2021)

Estimage: a webserver hub for the computation of methylation age. - Pietro Di Lena; Claudia Sala; Christine Nardini (Nucleic Acids Res., 2021)

Evaluation of different computational methods for DNA methylation-based biological age. - Pietro Di Lena; Claudia Sala; Christine Nardini (Briefings Bioinform., 2022)

Editorial: Computational Methods for Analysis of DNA Methylation Data. - Pietro Di Lena; Christine Nardini; Matteo Pellegrini (Frontiers Bioinform., 2022)

Editorial: Computational methods for analysis of DNA methylation data, volume II. - Pietro Di Lena; Christine Nardini; Matteo Pellegrini (Frontiers Bioinform., 2024)

Where are we in the implementation of tissue-specific epigenetic clocks? - Claudia Sala; Pietro Di Lena; Danielle Fernandes Durso; Ìtalo Faria do Valle; Maria Giulia Bacalini; Daniele Dall'Olio; Claudio Franceschi; Gastone C. Castellani; Paolo Garagnani; Christine Nardini (Frontiers Bioinform., 2024)