MonteGrappa: An iterative Monte Carlo program to optimize biomolecular potentials in simplified models. - Guido Tiana; Fulgencia Villa; Y. Zhan; Riccardo Capelli; Cristina Paissoni; Pietro Sormanni; Edith Heard; Luca Giorgetti; R. Meloni (Comput. Phys. Commun., 2015)

Parapred: antibody paratope prediction using convolutional and recurrent neural networks. - Edgar Liberis; Petar Velickovic; Pietro Sormanni; Michele Vendruscolo; Pietro Liò (Bioinform., 2018)

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins. - Damiano Piovesan; Francesco Tabaro; Lisanna Paladin; Marco Necci; Ivan Micetic; Carlo Camilloni; Norman E. Davey; Zsuzsanna Dosztányi; Bálint Mészáros; Alexander Miguel Monzon; Gustavo D. Parisi; Éva Schád; et al. (Nucleic Acids Res., 2018)

Attentive Cross-Modal Paratope Prediction. - Andreea Deac; Petar Velickovic; Pietro Sormanni (J. Comput. Biol., 2019)

A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data. - Ajeet K. Sharma; Pietro Sormanni; Nabeel Ahmed; Prajwal Ciryam; Ulrike A. Friedrich; Günter Kramer; Edward P. O'Brien (PLoS Comput. Biol., 2019)

Sequence-based prediction of pH-dependent protein solubility using CamSol. - Marc Oeller; Ryan Kang; Rosie Bell; Hannes Ausserwöger; Pietro Sormanni; Michele Vendruscolo (Briefings Bioinform., 2023)

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. - Alessio Del Conte; Adel Bouhraoua; Mahta Mehdiabadi; Damiano Clementel; Alexander Miguel Monzon; Alex S. Holehouse; Daniel A. Griffith; Ryan J. Emenecker; Ashwini Patil; Ronesh Sharma; Tatsuhiko Tsunoda; Alok Sharma; et al. (Nucleic Acids Res., 2023)

Improving Antibody Humanness Prediction using Patent Data. - Talip Ucar; Aubin Ramon; Dino Oglic; Rebecca Croasdale-Wood; Tom Diethe; Pietro Sormanni (ICML, 2024)

Understanding Biology in the Age of Artificial Intelligence. - Elsa Lawrence; Adham El-Shazly; Srijit Seal; Chaitanya K. Joshi; Pietro Liò; Shantanu Singh; Andreas Bender 002; Pietro Sormanni; Matthew Greenig (CoRR, 2024)

Assessing antibody and nanobody nativeness for hit selection and humanization with AbNatiV. - Aubin Ramon; Montader Ali; Misha Atkinson; Alessio Saturnino; Kieran Didi; Cristina Visentin; Stefano Ricagno; Xing Xu; Matthew Greenig; Pietro Sormanni (Nat. Mac. Intell., 2024)

IgCraft: A versatile sequence generation framework for antibody discovery and engineering. - Matthew Greenig; Haowen Zhao; Vladimir Radenkovic; Aubin Ramon; Pietro Sormanni (CoRR, 2025)