Secondary structure based analysis and classification of biological interfaces: identification of binding motifs in protein-protein interactions. - Mainak Guharoy; Pinak Chakrabarti (Bioinform., 2007)

Cavities and Atomic Packing in Protein Structures and Interfaces. - Shrihari Sonavane; Pinak Chakrabarti (PLoS Comput. Biol., 2008)

Accessibility and partner number of protein residues, their relationship and a webserver, ContPlot for their display. - Arumay Pal; Ranjit Prasad Bahadur; Partha Sarathi Ray; Pinak Chakrabarti (BMC Bioinform., 2009)

Empirical estimation of the energetic contribution of individual interface residues in structures of protein-protein complexes. - Mainak Guharoy; Pinak Chakrabarti (J. Comput. Aided Mol. Des., 2009)

Conserved residue clusters at protein-protein interfaces and their use in binding site identification. - Mainak Guharoy; Pinak Chakrabarti (BMC Bioinform., 2010)

Prediction of Active Site Cleft Using Support Vector Machines. - Shrihari Sonavane; Pinak Chakrabarti (J. Chem. Inf. Model., 2010)