Integrative investigation of metabolic and transcriptomic data. - Pinar Pir; Betül Kirdar; Andrew Hayes; Z. Ilsen Önsan; Kutlu Ö. Ülgen; Stephen G. Oliver (BMC Bioinform., 2006)

The Robot Scientist Adam. - Ross D. King; Jem J. Rowland; Wayne Aubrey; Maria Liakata; Magdalena Markham; Larisa N. Soldatova; Ken E. Whelan; Amanda Clare; Mike Young; Andrew Sparkes; Stephen G. Oliver; Pinar Pir (Computer, 2009)

Further developments towards a genome-scale metabolic model of yeast. - Paul D. Dobson; Kieran Smallbone; Daniel Jameson; Evangelos Simeonidis; Karin Lanthaler; Pinar Pir; Chuan Lu; Neil Swainston; Warwick B. Dunn; Paul Fisher; Duncan Hull; Marie Brown; et al. (BMC Syst. Biol., 2010)

How yeast re-programmes its transcriptional profile in response to different nutrient impulses. - Duygu Dikicioglu; Muhammed Erkan Karabekmez; Bharat Rash; Pinar Pir; Betül Kirdar; Stephen G. Oliver (BMC Syst. Biol., 2011)

The genetic control of growth rate: a systems biology study in yeast. - Pinar Pir; Alex Gutteridge; Jian Wu; Bharat Rash; Douglas B. Kell; Nianshu Zhang; Stephen G. Oliver (BMC Syst. Biol., 2012)

Toward Community Standards and Software for Whole-Cell Modeling. - Dagmar Waltemath; Jonathan R. Karr; Frank T. Bergmann; Vijayalakshmi Chelliah; Michael Hucka; Marcus Krantz; Wolfram Liebermeister; Pedro Mendes 001; Chris J. Myers; Pinar Pir; Begum Alaybeyoglu; Naveen K. Aranganathan; et al. (IEEE Trans. Biomed. Eng., 2016)

MODOMICS: a database of RNA modification pathways. 2021 update. - Pietro Boccaletto; Filip Stefaniak; Angana Ray; Andrea Cappannini; Sunandan Mukherjee; Elzbieta Purta; Malgorzata Kurkowska; Niloofar Shirvanizadeh; Eliana Destefanis; Paula Groza; Gülben Avsar; Antonia Romitelli; et al. (Nucleic Acids Res., 2022)

Machine learning based bioinformatics analysis of intron usage alterations and metabolic regulation in adipose browning. - Hamza Umut Karakurt; Pinar Pir (Turkish J. Electr. Eng. Comput. Sci., 2023)