Protein structural similarity search by Ramachandran codes. - Wei-Cheng Lo; Po-Jung Huang; Chih-Hung Chang; Ping-Chiang Lyu (BMC Bioinform., 2007)

Predicting helix-helix interactions from residue contacts in membrane proteins. - Allan Lo; Yi-Yuan Chiu; Einar Andreas Rødland; Ping-Chiang Lyu; Ting-Yi Sung; Wen-Lian Hsu (Bioinform., 2009)

CPDB: a database of circular permutation in proteins. - Wei-Cheng Lo; Chi-Ching Lee; Che-Yu Lee; Ping-Chiang Lyu (Nucleic Acids Res., 2009)

iSARST: an integrated SARST web server for rapid protein structural similarity searches. - Wei-Cheng Lo; Che-Yu Lee; Chi-Ching Lee; Ping-Chiang Lyu (Nucleic Acids Res., 2009)

DSAP: deep-sequencing small RNA analysis pipeline. - Po-Jung Huang; Yi-Chung Liu; Chi-Ching Lee; Wei-Chen Lin; Richie Ruei-Chi Gan; Ping-Chiang Lyu; Petrus Tang (Nucleic Acids Res., 2010)

Reconstructing phylogeny from metabolic substrate-product relationships. - Che-Wei Chang; Ping-Chiang Lyu; Masanori Arita (BMC Bioinform., 2011)

Construction and analysis of a plant non-specific lipid transfer protein database (nsLTPDB). - Nai-Jyuan Wang; Chi-Ching Lee; Chao-Sheng Cheng; Wei-Cheng Lo; Ya-Fen Yang; Ming-Nan Chen; Ping-Chiang Lyu (BMC Genom., 2012)

CPred: a web server for predicting viable circular permutations in proteins. - Wei-Cheng Lo; Li-Fen Wang; Yen-Yi Liu; Tian Dai; Jenn-Kang Hwang; Ping-Chiang Lyu (Nucleic Acids Res., 2012)