Quantum-classical Molecular Dynamics and Its Computer Implementation. - Piotr Bala; Palo Grochowski; Bogdan Lesyng; James Andrew McCammon (Comput. Chem., 1995)

Parallel Version of a Quantum Classical Molecular Dynamics Code for Complex Molecular and Biomolecular Systems. - Piotr Bala; Terry W. Clark; Pawel Grochowski; Bogdan Lesyng; James Andrew McCammon (PVM/MPI, 1997)

Advanced Calculations and Visualization of Enzymatic Reactions with the Combined Quantum Classical Molecular Dynamics Code. - Piotr Bala; Pawel Grochowski; Krzysztof Nowinski; Terry W. Clark; Bogdan Lesyng; James Andrew McCammon (PARA, 1998)

Pfortran and Co-Array Fortran as Tools for Parallelization of a Large-Scale Scientific Application. - Piotr Bala; Terry W. Clark (Euro-Par, 2000)

The Performance of Different Communication Mechanisms and Algorithms Used for Parallelization of Molecular Dynamics Code. - Rafal Metkowski; Piotr Bala; Terry W. Clark (PPAM, 2001)

Application of Pfortran and Co-Array Fortran in the parallelization of the GROMOS96 molecular dynamics module. - Piotr Bala; Terry W. Clark; L. Ridgway Scott (Sci. Program., 2001)

BioGRID - Uniform Platform for Biomoleculago Nazar Applications (Research Note). - Jaroslaw Pytlinski; Lukasz Skorwider; Piotr Bala; Miroslaw Nazaruk; Konrad Wawruch (Euro-Par, 2002)

BioGRID - An European Grid for Molecular Biology. - Piotr Bala; Jaroslaw Pytlinski; Miroslaw Nazaruk; Victor Alessandrini; Denis Girou; Dietmar W. Erwin; Daniel Mallmann; Jon MacLaren; John Brooke; Jan Frode Myklebust (HPDC, 2002)

Web Based Real Time System for Wavepacket Dynamics. - Aleksander Nowinski; Krzysztof Nowinski; Piotr Bala (International Conference on Computational Science (1), 2002)

Uniform Access to the Distributed Resources for the Computational Chemistry Using UNICORE. - Jaroslaw Pytlinski; Lukasz Skorwider; Krzysztof Benedyczak; Michal Wronski; Piotr Bala; Valentina Huber (International Conference on Computational Science, 2003)

Hierarchical Communication for the Parallel Simulations in the Distributed Environment. - Rafal Metkowski; Piotr Bala (PPAM, 2003)

EUROGRID–European computational grid testbed. - Bogdan Lesyng; Piotr Bala; Dietmar W. Erwin (J. Parallel Distributed Comput., 2003)

Large Scale Protein Sequence Alignment Using FPGA Reprogrammable Logic Devices. - Stefan Dydel; Piotr Bala (FPL, 2004)

Interactive Visualization for the UNICORE Grid Environment. - Piotr Bala; Krzysztof Benedyczak; Aleksander Nowinski; Krzysztof Nowinski; Jaroslaw Wypychowski (International Conference on Computational Science, 2004)

Life Sciences Grid in EUROGRID and GRIP Projects. - Jaroslaw Wypychowski; Jaroslaw Pytlinski; Lukasz Skorwider; Miroslaw Nazaruk; Krzysztof Benedyczak; Michal Wronski; Piotr Bala (New Gener. Comput., 2004)

UNICORE as Uniform Grid Environment for Life Sciences. - Krzysztof Benedyczak; Michal Wronski; Aleksander Nowinski; Krzysztof Nowinski; Jaroslaw Wypychowski; Piotr Bala (EGC, 2005)

Real-Time Visualization in the Grid Using UNICORE Middleware. - Krzysztof Benedyczak; Aleksander Nowinski; Krzysztof Nowinski; Piotr Bala (PPAM, 2005)

Parallel Computing in Java: Looking for the Most Effective RMI Implementation for Clusters. - Rafal Metkowski; Piotr Bala (PPAM, 2005)

GridBeans: Support e-Science and Grid Applications. - Ralf Ratering; Alexander Lukichev; Morris Riedel; Daniel Mallmann; Andrea Vanni; Claudio Cacciari; S. Lanzarini; Krzysztof Benedyczak; Marcelina Borcz; R. Kluszcynski; Piotr Bala; Gert Ohme (e-Science, 2006)

BLAST Application on the GPE/UnicoreGS Grid. - Marcelina Borcz; Rafal Kluszczynski; Piotr Bala (Euro-Par Workshops, 2006)

Generation of Dynamic Heart Model Based on 4D Echocardiographic Images. - Michal Chlebiej; Pawel Mikolajczak; Krzysztof Nowinski; Piotr Scislo; Piotr Bala (ICCSA (5), 2006)

A DRMAA-Based Target System Interface Framework for UNICORE. - Morris Riedel; Roger Menday; Achim Streit; Piotr Bala (ICPADS (2), 2006)

UniGrids Streaming Framework: Enabling Streaming for the New Generation of Grids. - Krzysztof Benedyczak; Aleksander Nowinski; Krzysztof Nowinski; Piotr Bala (PARA, 2006)

Enabling Reconfigurable Hardware Accelerators for the Grid. - Stefan Dydel; Krzysztof Benedyczak; Piotr Bala (PARELEC, 2006)

Reconstruction of Heart Motion from 4D Echocardiographic Images. - Michal Chlebiej; Krzysztof Nowinski; Piotr Scislo; Piotr Bala (CAIP, 2007)

Web Services Interfaces and Open Standards Integration into the European UNICORE 6 Grid Middleware. - Morris Riedel; Bernd Schuller; Daniel Mallmann; Roger Menday; Achim Streit; Bastian Tweddell; M. Shahbaz Memon; A. Shiraz Memon; Bastian Demuth; Thomas Lippert; David F. Snelling; Sven van den Berghe; et al. (EDOCW, 2007)

Flexible Streaming Infrastructure for UNICORE. - Krzysztof Benedyczak; Aleksander Nowinski; Piotr Bala (Euro-Par Workshops, 2007)

Chemomentum - UNICORE 6 Based Infrastructure for Complex Applications in Science and Technology. - Bernd Schuller; Bastian Demuth; Hartmut Mix; Katharina Rasch; Mathilde Romberg; Sulev Sild; Uko Maran; Piotr Bala; Enrico Del Grosso; Mosé Casalegno; Nadège Piclin; Marco Pintore; et al. (Euro-Par Workshops, 2007)

Supporting NAMD Application on the Grid Using GPE. - Rafal Kluszczynski; Piotr Bala (PPAM, 2007)

Asynchronous Parallel Molecular Dynamics Simulations. - Jaroslaw Mederski; Lukasz Mikulski; Piotr Bala (PPAM, 2007)

Estimating Metabolic Pathways Parameters Using Distributed Monte Carlo Method. - Pawel Lebioda; Piotr Bala (ICCSA (2), 2008)

Unicore 6 as a platform for desktop grid. - Jakub Jurkiewicz; Krzysztof Nowinski; Piotr Bala (IMCSIT, 2008)

Development of heart motion reconstruction framework based on the 4D echocardiographic data. - Michal Chlebiej; Krzysztof Nowinski; Piotr Scislo; Piotr Bala (Ann. UMCS Informatica, 2008)

Classification Visualization across Mapping on a Sphere. - Veslava Osinska; Piotr Bala (New Trends in Multimedia and Network Information Systems, 2008)

Towards a Common Authorization Infrastructure for the Grid. - Krzysztof Benedyczak; Marcin Lewandowski; Piotr Bala (Euro-Par Workshops, 2009)

Scientific Documents Management System - Application of Kohonens Neural Networks with Reinforcement in Keywords Extraction. - Blazej Zyglarski; Piotr Bala (KMIS, 2009)

Neural Networks Aided Automatic Keywords Selection. - Blazej Zyglarski; Piotr Bala (IC3K, 2009)

KARDIONET: Telecardiology Based on GRID Technology. - Janusz Sierdzinski; Piotr Bala; Robert Rudowski; Marcin Grabowski; Grzegorz Karpinski; Bartosz Kaczynski (MIE, 2009)

UNICORE Virtual Organizations System. - Krzysztof Benedyczak; Marcin Lewandowski; Aleksander Nowinski; Piotr Bala (PPAM (2), 2009)

Contests Hosting Service as a tool to teach programming. - Rafal Kluszczynski; Lukasz Mikulski; Marek Nowicki; Piotr Bala (Ann. UMCS Informatica, 2009)

Statistical Analysis of Biomolecular Data using UNICORE Workflows. - Marcelina Borcz; Rafal Kluszczynski; Piotr Bala (BIOINFORMATICS, 2010)

Keywords Extraction - Selecting Keywords in Natural Language Texts with Markov Chains and Neural Networks. - Blazej Zyglarski; Piotr Bala (KMIS, 2010)

UNICORE 6 - Recent and Future Advancements. - Achim Streit; Piotr Bala; Alexander Beck-Ratzka; Krzysztof Benedyczak; Sandra Bergmann; Rebecca Breu; Jason Milad Daivandy; Bastian Demuth; Anastasia Eifer; André Giesler; Björn Hagemeier; Sonja Holl; et al. (Ann. des Télécommunications, 2010)

Data Centered Collaboration in a Mobile Environment. - Maciej Panka; Piotr Bala (FedCSIS, 2011)

Visualization of multidimensional data on distributed mobile devices using interactive video streaming techniques. - Maciej Panka; Michal Chlebiej; Krzysztof Benedyczak; Piotr Bala (MIPRO, 2011)

Polish Computational Research Space for International Scientific Collaborations. - Jacek Kitowski; Michal Turala; Kazimierz Wiatr; Lukasz Dutka; Marian Bubak; Tomasz Szepieniec; Marcin Radecki; Mariusz Sterzel; Zofia Mosurska; Robert Pajak; Renata Slota; Krzysztof Kurowski; et al. (PPAM (1), 2011)

Parallel Version of Image Segmentation Algorithm Using Polygonal Markov Fields. - Rafal Kluszczynski; Piotr Bala (PPAM (1), 2011)

Distributed Collaborative Visualization on Mobile Devices Using Interactive Video Streaming Techniques. - Maciej Panka; Michal Chlebiej; Krzysztof Benedyczak; Piotr Bala (PPAM (2), 2011)

Key aspects of the UNICORE 6 security model. - Krzysztof Benedyczak; Piotr Bala; Sven van den Berghe; Roger Menday; Bernd Schuller (Future Gener. Comput. Syst., 2011)

Seamless Access to the PL-Grid e-Infrastructure Using UNICORE Middleware. - Krzysztof Benedyczak; Marcin Stolarek; Radoslaw Rowicki; Rafal Kluszczynski; Marcelina Borcz; Grzegorz Marczak; Maciej Filocha; Piotr Bala (PL-Grid, 2012)

Training in the PL-Grid as Key Component to Attract Users to Grid e-Infrastructures. - Marcelina Borcz; Krzysztof Benedyczak; Adam Padee; Rafal Kluszczynski; Grzegorz Marczak; Miroslaw Zdybek; Maciej Pawlik; Maciej Filocha; Piotr Bala (PL-Grid, 2012)

Processing the Biomedical Data on the Grid Using the UNICORE Workflow System. - Marcelina Borcz; Rafal Kluszczynski; Katarzyna Skonieczna; Tomasz Grzybowski; Piotr Bala (Euro-Par Workshops, 2012)

Information Retrieval across Information Visualization. - Veslava Osinska; Piotr Bala; Michal Gawarkiewicz (FedCSIS, 2012)

Parallel computations in Java with PCJ library. - Marek Nowicki; Piotr Bala (HPCS, 2012)

PCJ - New Approach for Parallel Computations in Java. - Marek Nowicki; Piotr Bala (PARA, 2012)

Development of Domain-Specific Solutions Within the Polish Infrastructure for Advanced Scientific Research. - Jacek Kitowski; Kazimierz Wiatr; Piotr Bala; Marcelina Borcz; Andrzej Czyzewski; Lukasz Dutka; Rafal Kluszczynski; Jozef Kotus; Piotr Kustra; Norbert Meyer; Andrzej Milenin; Zofia Mosurska; et al. (PPAM (1), 2013)

Searching of Correlation of Weather and Cardiologic Events - Computer Methods for Relation Discovery and Events Prediction. - Blazej Zyglarski; Piotr Bala; Jeremi Mizerski (HEALTHINF, 2014)

Grid services for genomic research. Polish national grid perspective. - Marcelina Borcz; Rafal Kluszczynski; Grzegorz Marczak; Krzysztof Benedyczak; Piotr Bala (HPCS, 2014)

PCJ - Java library for high performance computing in PGAS model. - Marek Nowicki; Lukasz Górski; Patryk Grabrczyk; Piotr Bala (HPCS, 2014)

On-line Service for Teaching Parallel Programming. - Marek Nowicki; Maciej Marchwiany; Maciej Szpindler; Piotr Bala (Euro-Par Workshops, 2015)

Parallel Differential Evolution in the PGAS Programming Model Implemented with PCJ Java Library. - Lukasz Górski; Franciszek Rakowski; Piotr Bala (PPAM (1), 2015)

The Performance Evaluation of the Java Implementation of Graph500. - Magdalena Ryczkowska; Marek Nowicki; Piotr Bala (PPAM (2), 2015)

Study of dynamics of structured knowledge: Qualitative analysis of different mapping approaches. - Veslava Osinska; Piotr Bala (J. Inf. Sci., 2015)

A case study of software load balancing policies implemented with the PGAS programming model. - Lukasz Górski; Piotr Bala; Franciszek Rakowski (HPCS, 2016)

Massively Parallel Sequence Alignment with BLAST Through Work Distribution Implemented Using PCJ Library. - Marek Nowicki; Davit Bzhalava; Piotr Bala (ICA3PP, 2017)

Evaluation of the Parallel Performance of the Java and PCJ on the Intel KNL Based Systems. - Marek Nowicki; Lukasz Górski; Piotr Bala (PPAM (2), 2017)

Big Data Analytics in Java with PCJ Library: Performance Comparison with Hadoop. - Marek Nowicki; Magdalena Ryczkowska; Lukasz Górski; Piotr Bala (PPAM (2), 2017)

PCJ - Java Library for Highly Scalable HPC and Big Data Processing. - Marek Nowicki; Lukasz Górski; Piotr Bala (HPCS, 2018)

Machine Learning for detection of viral sequences in human metagenomic datasets. - Zurab Bzhalava; Ardi Tampuu; Piotr Bala; Raul Vicente; Joakim Dillner (BMC Bioinform., 2018)

Massively Parallel Implementation of Sequence Alignment with Basic Local Alignment Search Tool Using Parallel Computing in Java Library. - Marek Nowicki; Davit Bzhalava; Piotr Bala (J. Comput. Biol., 2018)

Performance Evaluation of Java/PCJ Implementation of Parallel Algorithms on the Cloud. - Marek Nowicki; Lukasz Górski; Piotr Bala (Euro-Par Workshops, 2020)

Lightning Talks of EduHPC 2020. - Joel C. Adams; Godmar Back; Piotr Bala; Michael K. Bane; Kirk W. Cameron; Henri Casanova; Margaret Ellis 001; Rafael Ferreira da Silva; Gautam Jethwani; William Koch; Tabitha Lee; Tongyu Zhu (EduHPC@SC, 2020)

PCJ Java library as a solution to integrate HPC, Big Data and Artificial Intelligence workloads. - Marek Nowicki; Lukasz Górski; Piotr Bala (J. Big Data, 2021)

Performance evaluation of Java/PCJ implementation of parallel algorithms on the cloud (extended version). - Marek Nowicki; Lukasz Górski; Piotr Bala (Concurr. Comput. Pract. Exp., 2023)

HPV-KITE: sequence analysis software for rapid HPV genotype detection. - Marek Nowicki; Magdalena Mroczek; Dhananjay Mukhedkar; Piotr Bala; Ville Nikolai Pimenoff; Laila Sara Arroyo Mühr (Briefings Bioinform., 2024)