Protein fragment reconstruction using various modeling techniques. - Michal J. Boniecki; Piotr Rotkiewicz; Jeffrey Skolnick; Andrzej Kolinski (J. Comput. Aided Mol. Des., 2003)

Fast procedure for reconstruction of full-atom protein models from reduced representations. - Piotr Rotkiewicz; Jeffrey Skolnick (J. Comput. Chem., 2008)

MORPH-PRO: a novel algorithm and web server for protein morphing. - Natalie Castellana; Andrey Lushnikov; Piotr Rotkiewicz; Natasha Sefcovic; Pavel A. Pevzner; Adam Godzik; Kira Vyatkina (Algorithms Mol. Biol., 2013)

PDBFlex: exploring flexibility in protein structures. - Thomas Hrabe; Zhanwen Li; Mayya Sedova; Piotr Rotkiewicz; Lukasz Jaroszewski; Adam Godzik (Nucleic Acids Res., 2016)