e-LiSe - an online tool for finding needles in the "(Medline) haystack". - Arek Gladki; Pawel Siedlecki; Szymon Kaczanowski; Piotr Zielenkiewicz (Bioinform., 2008)

The High Throughput Sequence Annotation Service (HT-SAS) - the shortcut from sequence to true Medline words. - Szymon Kaczanowski; Pawel Siedlecki; Piotr Zielenkiewicz (BMC Bioinform., 2009)

A Comprehensive, Quantitative, and Genome-Wide Model of Translation. - Marlena Siwiak; Piotr Zielenkiewicz (PLoS Comput. Biol., 2010)

The evolutionary rate of antibacterial drug targets. - Arkadiusz Gladki; Szymon Kaczanowski; Pawel Szczesny; Piotr Zielenkiewicz (BMC Bioinform., 2013)

DiSCuS: An Open Platform for (Not Only) Virtual Screening Results Management. - Maciej Wójcikowski; Piotr Zielenkiewicz; Pawel Siedlecki (J. Chem. Inf. Model., 2014)

Open Drug Discovery Toolkit (ODDT): a new open-source player in the drug discovery field. - Maciej Wójcikowski; Piotr Zielenkiewicz; Pawel Siedlecki (J. Cheminformatics, 2015)

Tools4miRs - one place to gather all the tools for miRNA analysis. - Anna Lukasik; Maciej Wójcikowski; Piotr Zielenkiewicz (Bioinform., 2016)

Pafnucy - A deep neural network for structure-based drug discovery. - Marta M. Stepniewska-Dziubinska; Piotr Zielenkiewicz; Pawel Siedlecki (CoRR, 2017)

Development and evaluation of a deep learning model for protein-ligand binding affinity prediction. - Marta M. Stepniewska-Dziubinska; Piotr Zielenkiewicz; Pawel Siedlecki (Bioinform., 2018)

Detection of protein-ligand binding sites with 3D segmentation. - Marta M. Stepniewska-Dziubinska; Piotr Zielenkiewicz; Pawel Siedlecki (CoRR, 2019)

Using Machine Learning in Accuracy Assessment of Knowledge-Based Energy and Frequency Base Likelihood in Protein Structures. - Katerina Serafimova; Iliyan Mihaylov; Dimitar Vassilev; Irena Avdjieva; Piotr Zielenkiewicz; Szymon Kaczanowski (ICCS (3), 2020)