Evolving genetic programming trees in a rule-based learning framework. - Siddharth Verma; Piyush Borole; Ryan J. Urbanowicz (GECCO Companion, 2020)

Knowledge Graph Embeddings in the Biomedical Domain: Are They Useful? A Look at Link Prediction, Rule Learning, and Downstream Polypharmacy Tasks. - Aryo Pradipta Gema; Dominik Grabarczyk; Wolf De Wulf; Piyush Borole; Javier Antonio Alfaro; Pasquale Minervini; Antonio Vergari; Ajitha Rajan (CoRR, 2023)

Neuronal Resilience and Calcium Signaling Pathways in the Context of Synapse Loss and Calcium Leaks: A Computational Modeling Study and Implications for Alzheimer's Disease. - Piyush Borole; James Rosado; Meirose Neal; Gillian Queisser (SIAM J. Appl. Math., 2023)

Tracing Pain: Predictive Modeling for Migraine and Headache Triggers. - Israa Alqassem; Piyush Borole; Ammar Shaker; Ajitha Rajan (ICHI, 2025)

MHCRule - Rule-based Model for Interpretable MHC Class I Binding Prediction. - Piyush Borole; Ajitha Rajan (SAC, 2025)