Adaptation of a fast Fourier transform-based docking algorithm for protein design. - Po-Ssu Huang; John J. Love; Stephen L. Mayo (J. Comput. Chem., 2005)

Exploring the repeat protein universe through computational protein design. - T. J. Brunette; Fabio Parmeggiani; Po-Ssu Huang; Gira Bhabha; Damian C. Ekiert; Susan E. Tsutakawa; Greg L. Hura; John A. Tainer; David Baker 001 (Nat., 2015)

Accurate de novo design of hyperstable constrained peptides. - Gaurav Bhardwaj; Vikram Khipple Mulligan; Christopher D. Bahl; Jason M. Gilmore; Peta J. Harvey; Olivier Cheneval; Garry W. Buchko; Surya V. S. R. K. Pulavarti; Quentin Kaas; Alexander Eletsky; Po-Ssu Huang; William A. Johnsen; et al. (Nat., 2016)

Design of a hyperstable 60-subunit protein icosahedron. - Yang Hsia; Jacob B. Bale; Shane Gonen; Dan Shi; William Sheffler; Kimberly K. Fong; Una Nattermann; Chunfu Xu; Po-Ssu Huang; Rashmi Ravichandran; Sue Yi; Trisha N. Davis; et al. (Nat., 2016)

Corrigendum: Design of a hyperstable 60-subunit protein icosahedron. - Yang Hsia; Jacob B. Bale; Shane Gonen; Dan Shi; William Sheffler; Kimberly K. Fong; Una Nattermann; Chunfu Xu; Po-Ssu Huang; Rashmi Ravichandran; Sue Yi; Trisha N. Davis; et al. (Nat., 2016)

Generative modeling for protein structures. - Namrata Anand; Po-Ssu Huang (NeurIPS, 2018)

De novo design of a fluorescence-activating β-barrel. - Jiayi Dou; Anastassia A. Vorobieva; William Sheffler; Lindsey Doyle; Hahnbeom Park; Matthew J. Bick; Binchen Mao; Glenna W. Foight; Min-Yen Lee; Lauren A. Gagnon; Lauren P. Carter; Banumathi Sankaran; et al. (Nat., 2018)

Fully differentiable full-atom protein backbone generation. - Namrata Anand; Raphael Eguchi; Po-Ssu Huang (DGS@ICLR, 2019)

Multi-scale structural analysis of proteins by deep semantic segmentation. - Raphael Eguchi; Po-Ssu Huang (Bioinform., 2020)

ProGen: Language Modeling for Protein Generation. - Ali Madani; Bryan McCann; Nikhil Naik 002; Nitish Shirish Keskar; Namrata Anand; Raphael R. Eguchi; Po-Ssu Huang; Richard Socher (CoRR, 2020)

Ig-VAE: Generative modeling of protein structure by direct 3D coordinate generation. - Raphael R. Eguchi; Christian A. Choe; Po-Ssu Huang (PLoS Comput. Biol., 2022)