Using Contextual Information to Clarify Gene Normalization Ambiguity. - Po-Ting Lai; Yue-Yang Bow; Chi-Hsin Huang; Hong-Jie Dai; Richard Tzong-Han Tsai; Wen-Lian Hsu (IRI, 2009)

PubMed-EX: a web browser extension to enhance PubMed search with text mining features. - Richard Tzong-Han Tsai; Hong-Jie Dai; Po-Ting Lai; Chi-Hsin Huang (Bioinform., 2009)

HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features. - Richard Tzong-Han Tsai; Po-Ting Lai; Hong-Jie Dai; Chi-Hsin Huang; Yue-Yang Bow; Yen-Ching Chang; Wen-Harn Pan; Wen-Lian Hsu (BMC Bioinform., 2009)

Global Ranking via Data Fusion. - Hong-Jie Dai; Po-Ting Lai; Richard Tzong-Han Tsai; Wen-Lian Hsu (COLING (Posters), 2010)

Using Contextual Information to Clarify Cross-Species Gene Normalization Ambiguity. - Richard Tzong-Han Tsai; Po-Ting Lai (Int. J. Softw. Eng. Knowl. Eng., 2010)

Multistage Gene Normalization and SVM-Based Ranking for Protein Interactor Extraction in Full-Text Articles. - Hong-Jie Dai; Po-Ting Lai; Richard Tzong-Han Tsai (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature. - Yu-Ching Fang; Po-Ting Lai; Hong-Jie Dai; Wen-Lian Hsu (BMC Bioinform., 2011)

Dynamic programming re-ranking for PPI interactor and pair extraction in full-text articles. - Richard Tzong-Han Tsai; Po-Ting Lai (BMC Bioinform., 2011)

Multi-stage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection. - Richard Tzong-Han Tsai; Po-Ting Lai (BMC Bioinform., 2011)

A Dynamic Programming Re-ranking Approach to Enhance PPI Interactor Extraction. - Po-Ting Lai; Richard Tzong-Han Tsai (Inf. Media Technol., 2011)

Coreference resolution of medical concepts in discharge summaries by exploiting contextual information. - Hong-Jie Dai; Chun-Yu Chen; Chi-Yang Wu; Po-Ting Lai; Richard Tzong-Han Tsai; Wen-Lian Hsu (J. Am. Medical Informatics Assoc., 2012)

NCU IISR System for NTCIR-11 MedNLP-2 Task. - Sheng-Wei Chen 002; Po-Ting Lai; Yi-Lin Tsai; Jay Kuan-Chieh Chung; Sherry Shih-Huan Hsiao; Richard Tzong-Han Tsai (NTCIR, 2014)

A Hybrid System for Temporal Relation Extraction from Discharge Summaries. - Yueh-Lin Yang; Po-Ting Lai; Richard Tzong-Han Tsai (TAAI, 2014)

A resource-saving collective approach to biomedical semantic role labeling. - Richard Tzong-Han Tsai; Po-Ting Lai (BMC Bioinform., 2014)

Enhancing of chemical compound and drug name recognition using representative tag scheme and fine-grained tokenization. - Hong-Jie Dai; Po-Ting Lai; Yung-Chun Chang; Richard Tzong-Han Tsai (J. Cheminformatics, 2015)

MET network in PubMed: a text-mined network visualization and curation system. - Hong-Jie Dai; Chu-Hsien Su; Po-Ting Lai; Ming-Siang Huang; Jitendra Jonnagaddala; Toni Rose Jue; Shruti Rao; Hui-Jou Chou; Marija Milacic; Onkar Singh; Syed Abdul Shabbir; Wen-Lian Hsu (Database J. Biol. Databases Curation, 2016)

BelSmile: a biomedical semantic role labeling approach for extracting biological expression language from text. - Po-Ting Lai; Yu-Yan Lo; Ming-Siang Huang; Yu-Cheng Hsiao; Richard Tzong-Han Tsai (Database J. Biol. Databases Curation, 2016)

NERChem: adapting NERBio to chemical patents via full-token features and named entity feature with chemical sub-class composition. - Richard Tzong-Han Tsai; Yu-Cheng Hsiao; Po-Ting Lai (Database J. Biol. Databases Curation, 2016)

Enhancing Drug-Drug Interaction Classification with Corpus-level Feature and Classifier Ensemble. - Jing Cyun Tu; Po-Ting Lai; Richard Tzong-Han Tsai (DDDSM@IJCNLP, 2017)

Statistical principle-based approach for gene and protein related object recognition. - Po-Ting Lai; Ming-Siang Huang; Ting-Hao Yang; Wen-Lian Hsu; Richard Tzong-Han Tsai (J. Cheminformatics, 2018)

Revised JNLPBA Corpus: A Revised Version of Biomedical NER Corpus for Relation Extraction Task. - Ming-Siang Huang; Po-Ting Lai; Richard Tzong-Han Tsai; Wen-Lian Hsu (CoRR, 2019)

Development and Validation of a Novel Reliable Method for Wet Testing on Biochemical Chip. - Po-Ting Lai; Yu-Hao Chiu; Chieh-Wen Lu; Kuang-Hsiang Liu; Tung-Liang Chiu; Wendy Chen (ITC-Asia, 2020)

Biomedical named entity recognition and linking datasets: survey and our recent development. - Ming-Siang Huang; Po-Ting Lai; Pei-Yen Lin; Yu-Ting You; Richard Tzong-Han Tsai; Wen-Lian Hsu (Briefings Bioinform., 2020)

BERT-GT: cross-sentence n-ary relation extraction with BERT and Graph Transformer. - Po-Ting Lai; Zhiyong Lu (Bioinform., 2021)

PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology. - Ling Luo 001; Shankai Yan; Po-Ting Lai; Daniel Veltri; Andrew J. Oler; Sandhya Xirasagar; Rajarshi Ghosh; Morgan Similuk; Peter N. Robinson; Zhiyong Lu (Bioinform., 2021)

BioRED: A Comprehensive Biomedical Relation Extraction Dataset. - Ling Luo 001; Po-Ting Lai; Chih-Hsuan Wei; Cecilia N. Arighi; Zhiyong Lu (AMIA, 2022)

BioRED: a rich biomedical relation extraction dataset. - Ling Luo 001; Po-Ting Lai; Chih-Hsuan Wei; Cecilia N. Arighi; Zhiyong Lu (Briefings Bioinform., 2022)

Assigning species information to corresponding genes by a sequence labeling framework. - Ling Luo 001; Chih-Hsuan Wei; Po-Ting Lai; Qingyu Chen 001; Rezarta Islamaj; Zhiyong Lu (Database J. Biol. Databases Curation, 2022)

A sequence labeling framework for extracting drug-protein relations from biomedical literature. - Ling Luo 001; Po-Ting Lai; Chih-Hsuan Wei; Zhiyong Lu (Database J. Biol. Databases Curation, 2022)

PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology. - Shankai Yan; Ling Luo 001; Po-Ting Lai; Daniel Veltri; Andrew J. Oler; Sandhya Xirasagar; Rajarshi Ghosh; Morgan Similuk; Peter N. Robinson; Zhiyong Lu (J. Biomed. Informatics, 2022)

AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning. - Ling Luo 001; Chih-Hsuan Wei; Po-Ting Lai; Robert Leaman; Qingyu Chen 001; Zhiyong Lu (Bioinform., 2023)

GNorm2: an improved gene name recognition and normalization system. - Chih-Hsuan Wei; Ling Luo 001; Rezarta Islamaj; Po-Ting Lai; Zhiyong Lu (Bioinform., 2023)

BioREx: Improving biomedical relation extraction by leveraging heterogeneous datasets. - Po-Ting Lai; Chih-Hsuan Wei; Ling Luo 001; Qingyu Chen 001; Zhiyong Lu (J. Biomed. Informatics, 2023)

Opportunities and challenges for ChatGPT and large language models in biomedicine and health. - Shubo Tian; Qiao Jin 001; Lana Yeganova; Po-Ting Lai; Qingqing Zhu; Xiuying Chen; Yifan Yang 006; Qingyu Chen 001; Won Kim 003; Donald C. Comeau; Rezarta Islamaj; Aadit Kapoor; et al. (Briefings Bioinform., 2024)

PubTator 3.0: an AI-powered Literature Resource for Unlocking Biomedical Knowledge. - Chih-Hsuan Wei; Alexis Allot; Po-Ting Lai; Robert Leaman; Shubo Tian; Ling Luo 001; Qiao Jin 001; Zhizheng Wang; Qingyu Chen 001; Zhiyong Lu (CoRR, 2024)

EnzChemRED, a rich enzyme chemistry relation extraction dataset. - Po-Ting Lai; Elisabeth Coudert; Lucila Aimo; Kristian B. Axelsen; Lionel Breuza; Edouard De Castro; Marc Feuermann; Anne Morgat; Lucille Pourcel; Ivo Pedruzzi; Sylvain Poux; Nicole Redaschi; et al. (CoRR, 2024)

GeneAgent: Self-verification Language Agent for Gene Set Knowledge Discovery using Domain Databases. - Zhizheng Wang; Qiao Jin 001; Chih-Hsuan Wei; Shubo Tian; Po-Ting Lai; Qingqing Zhu; Chi-Ping Day; Christina Ross; Zhiyong Lu (CoRR, 2024)

Demystifying Large Language Models for Medicine: A Primer. - Qiao Jin 001; Nicholas Wan; Robert Leaman; Shubo Tian; Zhizheng Wang; Yifan Yang 006; Zifeng Wang 008; Guangzhi Xiong; Po-Ting Lai; Qingqing Zhu; Benjamin Hou; Maame Sarfo-Gyamfi; et al. (CoRR, 2024)

The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII. - Rezarta Islamaj; Po-Ting Lai; Chih-Hsuan Wei; Ling Luo 001; Tiago Melo Almeida; Richard A. A. Jonker; Sofia I R. Conceição; Diana F. Sousa; Cong-Phuoc Phan; Jung-Hsien Chiang; Jiru Li; Dinghao Pan; et al. (Database J. Biol. Databases Curation, 2024)

The biomedical relationship corpus of the BioRED track at the BioCreative VIII challenge and workshop. - Rezarta Islamaj; Chih-Hsuan Wei; Po-Ting Lai; Ling Luo 001; Cathleen Coss; Preeti Gokal Kochar; Nicholas Miliaras; Oleg Rodionov; Keiko Sekiya; Dorothy Trinh; Deborah Whitman; Zhiyong Lu (Database J. Biol. Databases Curation, 2024)

Archive of PubTator 3.0 source code and trained models. - Chih-Hsuan Wei; Alexis Allot; Po-Ting Lai; Robert Leaman; Shubo Tian; Ling Luo 001; Qiao Jin 001; Zhizheng Wang; Qingyu Chen 001; Zhiyong Lu (Zenodo, 2024)

EnzChemRED, a rich enzyme chemistry relation extraction dataset. - Po-Ting Lai; Elisabeth Coudert; Lucila Aimo; Kristian B. Axelsen; Lionel Breuza; Edouard De Castro; Marc Feuermann; Anne Morgat; Lucille Pourcel; Ivo Pedruzzi; Sylvain Poux; Nicole Redaschi; et al. (Zenodo, 2024)

Enhancing Biomedical Relation Extraction with Directionality. - Po-Ting Lai; Chih-Hsuan Wei; Shubo Tian; Robert Leaman; Zhiyong Lu (CoRR, 2025)