MEtaData Format for Open Reef Data (MEDFORD). - Polina Shpilker; John Freeman; Hailey McKelvie; Jill Ashey; Jay-Miguel Fonticella; Hollie Putnam; Jane Greenberg; Lenore Cowen; Alva L. Couch; Noah M. Daniels (MTSR, 2021)

MEDFORD: A human- and machine-readable metadata markup language. - Polina Shpilker; John Freeman; Hailey McKelvie; Jill Ashey; Jay-Miguel Fonticella; Hollie Putnam; Jane Greenberg; Lenore Cowen; Alva L. Couch; Noah M. Daniels (Database J. Biol. Databases Curation, 2022)

Building the I (Interoperability) of FAIR for Performance Reproducibility of Large-Scale Composable Workflows in RECUP. - Bogdan Nicolae; Tanzima Z. Islam; Robert B. Ross; Huub J. J. Van Dam; Kevin Assogba; Polina Shpilker; Mikhail Titov; Matteo Turilli; Tianle Wang 001; Ozgur O. Kilic; Shantenu Jha; Line C. Pouchard (e-Science, 2023)

Context-Sensitive Editing for the MEDFORD Metadata Language. - Liam Strand; Andrew Powers; Polina Shpilker; Lenore Cowen; Alva L. Couch; Noah M. Daniels (MTSR, 2023)

Analyzing histone ChIP-seq data with a bin-based probability of being signal. - Vivian Hecht; Kevin Dong; Sreshtaa Rajesh; Polina Shpilker; Siddarth Wekhande; Noam Shoresh (PLoS Comput. Biol., 2023)

AnVILMEDFORD: Documenting Cloud-Based Analysis Projects Using the MEDFORD Metadata Language. - Benjamin Stubbs; Polina Shpilker; Michael Sayers; Shaun Wallace; Noah M. Daniels; Alva L. Couch (IEEE Big Data, 2024)

Cross-Referencing Metadata Through an Extension of the MEDFORD Language. - Polina Shpilker; Benjamin Stubbs; Michael Sayers; Lenore Cowen; Shaun Wallace; Alva L. Couch; Noah M. Daniels (MTSR, 2024)

Decoding the Functional Interactome of Non-model Organisms with PHILHARMONIC. - Samuel Sledzieski; Charlotte Versavel; Rohit Singh 001; Faith Ocitti; Kapil Devkota; Lokender Kumar; Polina Shpilker; Liza Roger; Jinkyu Yang; Nastassja Lewinski; Hollie Putnam; Bonnie Berger; et al. (RECOMB, 2025)

Automatic Metadata Capture and Processing for High-Performance Workflows. - Polina Shpilker; Line Pouchard (CoRR, 2025)