ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. - Gabriela Bindea; Bernhard Mlecnik; Hubert Hackl; Pornpimol Charoentong; Marie Tosolini; Amos Kirilovsky; Wolf-Herman Fridman; Franck Pagès; Zlatko Trajanoski; Jérôme Galon (Bioinform., 2009)

Mathematical models for translational and clinical oncology. - Ralf Gallasch; Mirjana Efremova; Pornpimol Charoentong; Hubert Hackl; Zlatko Trajanoski (J. Clin. Bioinform., 2013)

TIminer: NGS data mining pipeline for cancer immunology and immunotherapy. - Elias Tappeiner; Francesca Finotello; Pornpimol Charoentong; Clemens Mayer; Dietmar Rieder; Zlatko Trajanoski (Bioinform., 2017)