Direct hydroxide attack is a plausible mechanism for amidase antibody 43C9. - Lillian T. Chong; Pradipta Bandyopadhyay; Thomas S. Scanlan; Irwin D. Kuntz; Peter A. Kollman (J. Comput. Chem., 2003)

Riboswitch Detection Using Profile Hidden Markov Models. - Payal Singh; Pradipta Bandyopadhyay; Sudha Bhattacharya; A. Krishnamachari; Supratim Sengupta (BMC Bioinform., 2009)

Conformational Dynamics of HIV-1 protease: a Comparative molecular Dynamics Simulation Study with Multiple AMBER Force Fields. - Biswa Ranjan Meher; Mattaparthi Venkata Satish Kumar; Smriti Sharma; Pradipta Bandyopadhyay (J. Bioinform. Comput. Biol., 2012)

Calcium Ion Binding to the Mutants of Calmodulin: A Structure-Based Computational Predictive Model of Binding Affinity Using a Charge Scaling Approach in Molecular Dynamics Simulation. - Abdul Basit; Ajeet Kumar Yadav; Pradipta Bandyopadhyay (J. Chem. Inf. Model., 2022)