PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data. - Kuo Ping Chiu; Chee-Hong Wong; Qiongyu Chen; Pramila Ariyaratne; Hong Sain Ooi; Chia-Lin Wei; Wing-Kin Sung; Yijun Ruan (BMC Bioinform., 2006)

PE-Assembler: de novo assembler using short paired-end reads. - Pramila Nuwantha Ariyaratne; Wing-Kin Sung (Bioinform., 2011)