Steering Masked Discrete Diffusion Models via Discrete Denoising Posterior Prediction. - Jarrid Rector-Brooks; Mohsin Hasan; Zhangzhi Peng; Zachary Quinn; Cheng-Hao Liu; Sarthak Mittal; Nouha Dziri; Michael M. Bronstein; Yoshua Bengio; Pranam Chatterjee; Alexander Tong 001; Avishek Joey Bose (CoRR, 2024)

PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion. - Sophia Tang; Yinuo Zhang; Pranam Chatterjee (CoRR, 2024)

Steering Masked Discrete Diffusion Models via Discrete Denoising Posterior Prediction. - Jarrid Rector-Brooks; Mohsin Hasan; Zhangzhi Peng; Cheng-Hao Liu; Sarthak Mittal; Nouha Dziri; Michael M. Bronstein; Pranam Chatterjee; Alexander Tong 001; Joey Bose (ICLR, 2025)

Path Planning for Masked Diffusion Model Sampling. - Zhangzhi Peng; Zachary Bezemek; Sawan Patel; Jarrid Rector-Brooks; Sherwood Yao; Alexander Tong 001; Pranam Chatterjee (CoRR, 2025)

Gumbel-Softmax Flow Matching with Straight-Through Guidance for Controllable Biological Sequence Generation. - Sophia Tang; Yinuo Zhang; Alexander Tong 001; Pranam Chatterjee (CoRR, 2025)

Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design. - Tong Chen; Yinuo Zhang; Sophia Tang; Pranam Chatterjee (CoRR, 2025)

Branched Schrödinger Bridge Matching. - Sophia Tang; Yinuo Zhang; Alexander Tong 001; Pranam Chatterjee (CoRR, 2025)