Coarse-graining protein structures into their dynamic communities with DCI, a dynamic community identifier. - Ambuj Kumar; Pranav M. Khade; Karin S. Dorman; Robert L. Jernigan (Bioinform., 2022)

GOThresher: a program to remove annotation biases from protein function annotation datasets. - Parnal Joshi; Sagnik Banerjee; Xiao Hu; Pranav M. Khade; Iddo Friedberg (Bioinform., 2023)