CellSim3D: GPU accelerated software for simulations of cellular growth and division in three dimensions. - Pranav Madhikar; Jan Åström; Jan Westerholm; Mikko Karttunen (Comput. Phys. Commun., 2018)

VOTCA: multiscale frameworks for quantum and classical simulations in soft matter. - Björn Baumeier; Jens Wehner; Nicolas Renaud; Felipe Zapata 002; Rene Halver; Pranav Madhikar; Ruben Gerritsen; Gianluca Tirimbo; Javier Sijen; David Rosenberger; Joshua S. Brown; Vivek Sundaram; et al. (J. Open Source Softw., 2024)