Enhancing Searches for Optimal Trees Using SIESTA. - Pranjal Vachaspati; Tandy J. Warnow (RECOMB-CG, 2017)

Optimal Completion of Incomplete Gene Trees in Polynomial Time Using OCTAL. - Sarah A. Christensen; Erin K. Molloy; Pranjal Vachaspati; Tandy J. Warnow (WABI, 2017)

FastRFS: fast and accurate Robinson-Foulds Supertrees using constrained exact optimization. - Pranjal Vachaspati; Tandy J. Warnow (Bioinform., 2017)

OCTAL: Optimal Completion of gene trees in polynomial time. - Sarah A. Christensen; Erin K. Molloy; Pranjal Vachaspati; Tandy J. Warnow (Algorithms Mol. Biol., 2018)

TRACTION: Fast Non-Parametric Improvement of Estimated Gene Trees. - Sarah A. Christensen; Erin K. Molloy; Pranjal Vachaspati; Tandy J. Warnow (WABI, 2019)

Large scale phylogenomic estimation - Pranjal Vachaspati (2019)

Non-parametric correction of estimated gene trees using TRACTION. - Sarah A. Christensen; Erin K. Molloy; Pranjal Vachaspati; Ananya Yammanuru; Tandy J. Warnow (Algorithms Mol. Biol., 2020)