A Sequence Data Mining Protocol to Identify Best Representative Sequence for Protein Domain Families. - V. S. Gowri; Khader Shameer; Chilamakuri Chandra Sekhar Reddy; Prashant Shingate; Ramanathan Sowdhamini (ICDM Workshops, 2010)

3DSwap: curated knowledgebase of proteins involved in 3D domain swapping. - Khader Shameer; Prashant Shingate; S. C. P. Manjunath; M. Karthika; Ganesan Pugalenthi; Ramanathan Sowdhamini (Database J. Biol. Databases Curation, 2011)

3PFDB+: improved search protocol and update for the identification of representatives of protein sequence domain families. - Agnel Praveen Joseph; Prashant Shingate; Atul Kumar Upadhyay; Ramanathan Sowdhamini (Database J. Biol. Databases Curation, 2014)

ECMIS: computational approach for the identification of hotspots at protein-protein interfaces. - Prashant Shingate; Malini Manoharan; Anshul Sukhwal; Ramanathan Sowdhamini (BMC Bioinform., 2014)