PGP: parallel prokaryotic proteogenomics pipeline for MPI clusters, high-throughput batch clusters and multicore workstations. - Andrey Tovchigrechko; Pratap Venepally; Samuel H. Payne (Bioinform., 2014)

NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly. - Jamison M. McCorrison; Pratap Venepally; Indresh Singh; Derrick E. Fouts; Roger S. Lasken; Barbara A. Methé (BMC Bioinform., 2014)

Production of a Preliminary Quality Control Pipeline for Single Nuclei RNA-Seq and Its Application in the Analysis of Cell Type Diversity of Post-Mortem Human Brain Neocortex. - Brian D. Aevermann; Jamison M. McCorrison; Pratap Venepally; Rebecca D. Hodge; Trygve E. Bakken; Jeremy A. Miller; Mark Novotny; Danny N. Tran; Francisco Diez-Fuertes; Lena Christiansen; Fan Zhang; Frank Steemers; et al. (PSB, 2017)

LOCUST: a custom sequence locus typer for classifying microbial isolates. - Lauren M. Brinkac; Erin Beck; Jason M. Inman; Pratap Venepally; Derrick E. Fouts; Granger G. Sutton (Bioinform., 2017)