Chapter 13. Using Galaxy for Proteomics. - Candace R. Guerrero; Pratik D. Jagtap; James E. Johnson; Timothy J. Griffin (Proteome Informatics, 2016)

Improve your Galaxy text life: The Query Tabular Tool. - James E. Johnson; Praveen Kumar; Caleb Easterly; Mark Esler; Subina P. Mehta; Arthur C. Eschenlauer; Adrian D. Hegeman; Pratik D. Jagtap; Timothy J. Griffin (F1000Research, 2018)

Perspectives on automated composition of workflows in the life sciences. - Anna-Lena Lamprecht; Magnus Palmblad; Jon C. Ison; Veit Schwämmle; Mohammad Sadnan Al Manir; Ilkay Altintas; Christopher J. O. Baker; Ammar Ben Hadj Amor; Salvador Capella-Gutiérrez; Paulos Charonyktakis; Michael R. Crusoe; Yolanda Gil; et al. (F1000Research, 2021)

ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework. - Subina P. Mehta; Marie Crane; Emma Leith; Bérénice Batut; Saskia D. Hiltemann; Magnus Ø. Arntzen; Benoît Josef Kunath; Francesco Delogu; Ray Sajulga; Praveen Kumar; James E. Johnson; Timothy J. Griffin; et al. (F1000Research, 2021)

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. - Enis Afgan; Anton Nekrutenko; Björn A. Grüning; Daniel J. Blankenberg; Jeremy Goecks; Michael C. Schatz; Alexander E. Ostrovsky; Alexandru Mahmoud; Andrew J. Lonie; Anna Syme; Anne Fouilloux; Anthony Bretaudeau; et al. (Nucleic Acids Res., 2022)

Galaxy Training: A powerful framework for teaching! - Saskia D. Hiltemann; Helena Rasche; Simon L. Gladman; Hans-Rudolf Hotz; Delphine Larivière; Daniel J. Blankenberg; Pratik D. Jagtap; Thomas Wollmann; Anthony Bretaudeau; Nadia Goué; Timothy J. Griffin; Coline Royaux; et al. (PLoS Comput. Biol., 2023)