A mechanistic modeling framework reveals the key principles underlying tumor metabolism. - Shubham Tripathi; Jun Hyoung Park; Shivanand Pudakalakatti; Pratip K. Bhattacharya; Benny Abraham Kaipparettu; Herbert Levine (PLoS Comput. Biol., 2022)

iGTP: learning interpretable cellular embedding for inferring biological mechanisms underlying single-cell transcriptomics. - Kanglin Hsieh; Kai Zhang; Yan Chu 005; Lishan Yu; Xiaoyang Li; Nuo Hu; Isha Kawosa; Patrick G. Pilié; Pratip K. Bhattacharya; Degui Zhi; Xiaoqian Jiang; Zhongming Zhao; et al. (Briefings Bioinform., 2025)