Pipeline for inferring protein function from dynamics using coarse-grained molecular mechanics forcefield. - Pratiti Bhadra; Debnath Pal (Comput. Biol. Medicine, 2017)

How does Sec63 affect the conformation of Sec61 in yeast? - Pratiti Bhadra; Lalitha Yadhanapudi; Karin Römisch; Volkhard Helms (PLoS Comput. Biol., 2021)

CALM-AcPEP: Predicting Anticancer Peptides Using Cross-Attention and Pre-Trained Language Model. - Xinke Zhan; Tiantao Liu; Pratiti Bhadra; Yu-An Huang; Zhuhong You; Shirley W. I. Siu (ICIC (26), 2025)