Computational Identification of Regulatory Factors Involved in MicroRNA Transcription. - Praveen Sethupathy; Molly Megraw; M. Inmaculada Barrasa; Artemis G. Hatzigeorgiou (Panhellenic Conference on Informatics, 2005)

miRGen: a database for the study of animal microRNA genomic organization and function. - Molly Megraw; Praveen Sethupathy; Benoit Corda; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2007)

A Tutorial of the Poisson Random Field Model in Population Genetics. - Praveen Sethupathy; Sridhar Hannenhalli (Adv. Bioinformatics, 2008)

Accurate microRNA target prediction correlates with protein repression levels. - Manolis Maragkakis; Panagiotis Alexiou; Giorgos L. Papadopoulos; Martin Reczko; Theodore Dalamagas 001; Giorgos Giannopoulos; George I. Goumas; Evangelos Koukis; Kornilios Kourtis; Victor A. Simossis; Praveen Sethupathy; Thanasis Vergoulis; et al. (BMC Bioinform., 2009)

The database of experimentally supported targets: a functional update of TarBase. - Giorgos L. Papadopoulos; Martin Reczko; Victor A. Simossis; Praveen Sethupathy; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2009)

Promoter-proximal CCCTC-factor binding is associated with an increase in the transcriptional pausing index. - Sur Herrera Paredes; Michael F. Melgar; Praveen Sethupathy (Bioinform., 2013)

A model of electrophysiological heterogeneity in periglomerular cells. - Praveen Sethupathy; Daniel B. Rubin; Guo-Shi Li; Thomas A. Cleland (Frontiers Comput. Neurosci., 2013)

Transcriptomic analysis of human liver identifies a novel class of regulatory RNAs in chronic viral hepatitis and associated cancer. - Praveen Sethupathy (IWBBIO, 2014)

tDRmapper: challenges and solutions to mapping, naming, and quantifying tRNA-derived RNAs from human small RNA-sequencing data. - Sara R. Selitsky; Praveen Sethupathy (BMC Bioinform., 2015)

miRquant 2.0: an Expanded Tool for Accurate Annotation and Quantification of MicroRNAs and their isomiRs from Small RNA-Sequencing Data. - Matthew Kanke; Jeanette Baran-Gale; Jonathan Villanueva; Praveen Sethupathy (J. Integr. Bioinform., 2016)