fagin: synteny-based phylostratigraphy and finer classification of young genes. - Zebulun Arendsee; Jing Li; Urminder Singh; Priyanka Bhandary; Arun S. Seetharam; Eve Syrkin Wurtele (BMC Bioinform., 2019)

FINDER: A fully automated pipeline to FIND accurate gene structures from proteins and RNA-Seq expression data. - Sagnik Banerjee; Margaret Woodhouse; Roger P. Wise; Priyanka Bhandary; Taner Z. Sen; Carson M. Andorf (BCB, 2020)

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences. - Sagnik Banerjee; Priyanka Bhandary; Margaret Woodhouse; Taner Z. Sen; Roger P. Wise; Carson M. Andorf (BMC Bioinform., 2021)

Interaction models matter: an efficient, flexible computational framework for model-specific investigation of epistasis. - Sandra Batista; Vered Madar; Philip J. Freda; Priyanka Bhandary; Attri Ghosh; Nicholas Matsumoto; Apurva S. Chitre; Abraham A. Palmer; Jason H. Moore (BioData Min., 2024)

PAGER: A novel genotype encoding strategy for modeling deviations from additivity in complex trait association studies. - Philip J. Freda; Attri Ghosh; Priyanka Bhandary; Nicholas Matsumoto; Apurva S. Chitre; Jiayan Zhou; Molly A. Hall; Abraham A. Palmer; Tayo Obafemi-Ajayi; Jason H. Moore (BioData Min., 2024)

Distinct network patterns emerge from Cartesian and XOR epistasis models: a comparative network science analysis. - Zhendong Sha; Philip J. Freda; Priyanka Bhandary; Attri Ghosh; Nicholas Matsumoto; Jason H. Moore; Ting Hu 001 (BioData Min., 2024)

Using GPT-4 to write a scientific review article: a pilot evaluation study. - Zhiping Paul Wang; Priyanka Bhandary; Yizhou Wang; Jason H. Moore (BioData Min., 2024)