Bhageerath: A Web Enabled High Performance Computing (HPC) Software Suite for Predicting The Tertiary Structures of Small Globular Proteins Using all Atom Energy Based Ab initio Methods. - Shashank Shekhar; Priyanka Dhingra; Bharat Lakhani; Avinash Mishra; Bhyravabhotla Jayaram (BIOCOMP, 2010)

A homology/ab initio hybrid algorithm for sampling near-native protein conformations. - Priyanka Dhingra; Bhyravabhotla Jayaram (J. Comput. Chem., 2013)

Bhageerath-H: A homology/ab initio hybrid server for predicting tertiary structures of monomeric soluble proteins. - Bhyravabhotla Jayaram; Priyanka Dhingra; Avinash Mishra; Rahul Kaushik; Goutam Mukherjee; Ankita Singh; Shashank Shekhar (BMC Bioinform., 2014)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)