RAID v2.0: an updated resource of RNA-associated interactions across organisms. - Ying Yi; Yue Zhao; Chunhua Li 004; Lin Zhang; Huiying Huang; Yana Li; Lanlan Liu; Ping Hou; Tianyu Cui; Puwen Tan; Yongfei Hu; Ting Zhang; et al. (Nucleic Acids Res., 2017)

RNALocate: a resource for RNA subcellular localizations. - Ting Zhang; Puwen Tan; Liqiang Wang; Nana Jin; Yana Li; Lin Zhang; Huan Yang; Zhenyu Hu; Lining Zhang; Chunyu Hu; Chunhua Li 004; Kun Qian; et al. (Nucleic Acids Res., 2017)

MNDR v2.0: an updated resource of ncRNA-disease associations in mammals. - Tianyu Cui; Lin Zhang; Yan Huang; Ying Yi; Puwen Tan; Yue Zhao; Yongfei Hu; Liyan Xu; Enmin Li; Dong Wang 011 (Nucleic Acids Res., 2018)

RNAInter in 2020: RNA interactome repository with increased coverage and annotation. - Yunqing Lin; Tianyuan Liu; Tianyu Cui; Zhao Wang; Yuncong Zhang; Puwen Tan; Yan Huang; Jia Yu; Dong Wang 011 (Nucleic Acids Res., 2020)

RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation. - Tianyu Cui; Yiying Dou; Puwen Tan; Zhen Ni; Tianyuan Liu; Duolin Wang; Yan Huang; Kaican Cai; Xiaoyang Zhao; Dong Xu 002; Hao Lin 001; Dong Wang 011 (Nucleic Acids Res., 2022)

RNAInter v4.0: RNA interactome repository with redefined confidence scoring system and improved accessibility. - Juanjuan Kang; Qiang Tang 013; Jun He; Le Li; Nianling Yang; Shuiyan Yu; Mengyao Wang; Yuchen Zhang; Jiahao Lin; Tianyu Cui; Yongfei Hu; Puwen Tan; et al. (Nucleic Acids Res., 2022)

LncReader: identification of dual functional long noncoding RNAs using a multi-head self-attention mechanism. - Tianyuan Liu; Bohao Zou; Manman He; Yongfei Hu; Yiying Dou; Tianyu Cui; Puwen Tan; Shaobin Li; Shuan Rao; Yan Huang; Sixi Liu; Kaican Cai; et al. (Briefings Bioinform., 2023)

Improving gene isoform quantification with miniQuant. - Haoran Li; Puwen Tan; Qi Gao (Zenodo, 2025)