CircPro: an integrated tool for the identification of circRNAs with protein-coding potential. - Xianwen Meng; Qi Chen 010; Peijing Zhang; Ming Chen 005 (Bioinform., 2017)

SPORTS1.0: A Tool for Annotating and Profiling Non-coding RNAs Optimized for rRNA- and tRNA-derived Small RNAs. - Junchao Shi; Eun-A Ko; Kenton M. Sanders; Qi Chen 010; Tong Zhou 012 (Genom. Proteom. Bioinform., 2018)

Versatile interactions and bioinformatics analysis of noncoding RNAs. - Qi Chen 010; Xianwen Meng; Qi Liao; Ming Chen 005 (Briefings Bioinform., 2019)

CircFunBase: a database for functional circular RNAs. - Xianwen Meng; Dahui Hu; Peijing Zhang; Qi Chen 010; Ming Chen 005 (Database J. Biol. Databases Curation, 2019)

Non-Coding RNAs and their Integrated Networks. - Peijing Zhang; Wenyi Wu; Qi Chen 010; Ming Chen 005 (J. Integr. Bioinform., 2019)

Denoising Autoencoder, A Deep Learning Algorithm, Aids the Identification of A Novel Molecular Signature of Lung Adenocarcinoma. - Jun Wang 097; Xueying Xie; Junchao Shi; Wenjun He; Qi Chen 010; Liang Chen; Wanjun Gu; Tong Zhou 012 (Genom. Proteom. Bioinform., 2020)