DLTree: efficient and accurate phylogeny reconstruction using the dynamical language method. - Qi Wu 016; Zu-Guo Yu; Jianyi Yang 002 (Bioinform., 2017)

COACH-D: improved protein-ligand binding sites prediction with refined ligand-binding poses through molecular docking. - Qi Wu 016; Zhenling Peng; Yang Zhang 040; Jianyi Yang 002 (Nucleic Acids Res., 2018)

Enhanced prediction of RNA solvent accessibility with long short-term memory neural networks and improved sequence profiles. - Saisai Sun; Qi Wu 016; Zhenling Peng; Jianyi Yang 002 (Bioinform., 2019)

CATHER: a novel threading algorithm with predicted contacts. - Zongyang Du; Shuo Pan; Qi Wu 016; Zhenling Peng; Jianyi Yang 002 (Bioinform., 2020)

Protein contact prediction using metagenome sequence data and residual neural networks. - Qi Wu 016; Zhenling Peng; Ivan Anishchenko; Qian Cong; David Baker 001; Jianyi Yang 002 (Bioinform., 2020)