Target driven biochemical network reconstruction based on petri nets and simulated annealing. - Zujian Wu; Qian Gao 001; David R. Gilbert (CMSB, 2010)

A multiscale approach to modelling planar cell polarity in Drosophila wing using hierarchically coloured Petri nets. - Qian Gao 001; Fei Liu 006; David R. Gilbert; Monika Heiner; David Tree (CMSB, 2011)

Towards an Ontology of Biomodelling. - Larisa N. Soldatova; Qian Gao 001; David R. Gilbert (CMSB, 2012)

A machine learning approach for generating temporal logic classifications of complex model behaviours. - Daniele Maccagnola; Enza Messina; Qian Gao 001; David R. Gilbert (WSC, 2012)

Multiscale Modeling and Analysis of Planar Cell Polarity in the Drosophila Wing. - Qian Gao 001; David R. Gilbert; Monika Heiner; Fei Liu 006; Daniele Maccagnola; David Tree (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Speeding up systems biology simulations of biochemical pathways using condor. - Xuan Liu; Simon J. E. Taylor; Navonil Mustafee; Jun Wang; Qian Gao 001; David R. Gilbert (Concurr. Comput. Pract. Exp., 2014)