External Factor Variable Connectivity Index. - Qian-Nan Hu; Yi-Zeng Liang; Ya-Li Wang; Cheng-Jian Xu; Zhong-Da Zeng; Kai-Tai Fang; Xiao-Ling Peng; Hong Yin (J. Chem. Inf. Comput. Sci., 2003)

Structural Interpretation of a Topological Index. 1. External Factor Variable Connectivity Index (EFVCI). - Qian-Nan Hu; Yi-Zeng Liang; Xiao-Ling Peng; Hong Yin; Kai-Tai Fang (J. Chem. Inf. Model., 2004)

Structural Interpretation of the Topological Index. 2. The Molecular Connectivity Index, the Kappa Index, and the Atom-type E-State Index. - Qian-Nan Hu; Yi-Zeng Liang; Hong Yin; Xiao-Ling Peng; Kai-Tai Fang (J. Chem. Inf. Model., 2004)

RxnFinder: biochemical reaction search engines using molecular structures, molecular fragments and reaction similarity. - Qian-Nan Hu; Zhe Deng; Huanan Hu; Dong-Sheng Cao 001; Yi-Zeng Liang (Bioinform., 2011)

ChemoPy: freely available python package for computational biology and chemoinformatics. - Dong-Sheng Cao 001; Qing-Song Xu; Qian-Nan Hu; Yi-Zeng Liang (Bioinform., 2013)

Pairwise input neural network for target-ligand interaction prediction. - Caihua Wang; Juan Liu 007; Fei Luo 004; Yafang Tan; Zixin Deng; Qian-Nan Hu (BIBM, 2014)

Predicting target-ligand interactions using protein ligand-binding site and ligand substructures. - Caihua Wang; Juan Liu 007; Fei Luo 004; Zixing Deng; Qian-Nan Hu (BMC Syst. Biol., 2015)

BioSynther: a customized biosynthetic potential explorer. - Weizhong Tu; Haoran Zhang; Juan Liu 007; Qian-Nan Hu (Bioinform., 2016)

Multi-fields model for predicting target-ligand interaction. - Caihua Wang; Juan Liu 007; Fei Luo 004; Qian-Nan Hu (Neurocomputing, 2016)

SynBioEcoli: a comprehensive metabolism network of engineered E. coli in three dimensional visualization. - Weizhong Tu; Shaozhen Ding; Ling Wu; Zhe Deng; Hui Zhu 004; Xiaotong Xu; Chen Lin; Chaonan Ye; Minlu Han; Mengna Zhao; Juan Liu 007; Zixin Deng; et al. (Quant. Biol., 2017)

PhID: An Open-Access Integrated Pharmacology Interactions Database for Drugs, Targets, Diseases, Genes, Side-Effects, and Pathways. - Zhe Deng; Weizhong Tu; Zixin Deng; Qian-Nan Hu (J. Chem. Inf. Model., 2017)

PrecursorFinder: a customized biosynthetic precursor explorer. - Le Yuan; Yu Tian 006; Shaozhen Ding; Yanfang Liu; Fu Chen; Tong Zhang; Weizhong Tu; Junni Chen; Qian-Nan Hu (Bioinform., 2019)

Data-driven rational biosynthesis design: from molecules to cell factories. - Fu Chen; Le Yuan; Shaozhen Ding; Yu Tian 006; Qian-Nan Hu (Briefings Bioinform., 2020)

EnzyMine: a comprehensive database for enzyme function annotation with enzymatic reaction chemical feature. - Dandan Sun; Xingxiang Cheng; Yu Tian 006; Shaozhen Ding; Dachuan Zhang; Pengli Cai; Qian-Nan Hu (Database J. Biol. Databases Curation, 2020)

RxnBLAST: molecular scaffold and reactive chemical environment feature extractor for biochemical reactions. - Xingxiang Cheng; Dandan Sun; Dachuan Zhang; Yu Tian 006; Shaozhen Ding; Pengli Cai; Qian-Nan Hu (Bioinform., 2020)

BCSExplorer: a customized biosynthetic chemical space explorer with multifunctional objective function analysis. - Yu Tian 006; Ling Wu; Le Yuan; Shaozhen Ding; Fu Chen; Tong Zhang; Ailin Ren; Dachuan Zhang; Weizhong Tu; Junni Chen; Qian-Nan Hu (Bioinform., 2020)

Bio2Rxn: sequence-based enzymatic reaction predictions by a consensus strategy. - Tong Zhang; Yu Tian 006; Le Yuan; Fu Chen; Ailin Ren; Qian-Nan Hu (Bioinform., 2020)

novoPathFinder: a webserver of designing novel-pathway with integrating GEM-model. - Shaozhen Ding; Yu Tian 006; Pengli Cai; Dachuan Zhang; Xingxiang Cheng; Dandan Sun; Le Yuan; Junni Chen; Weizhong Tu; Dong-Qing Wei; Qian-Nan Hu (Nucleic Acids Res., 2020)

Cell2Chem: mining explored and unexplored biosynthetic chemical spaces. - Dongliang Liu; Mengying Han; Yu Tian 006; Linlin Gong; Cancan Jia; Pengli Cai; Weizhong Tu; Junni Chen; Qian-Nan Hu (Bioinform., 2021)

Transcriptor: a comprehensive platform for annotation of the enzymatic functions of transcripts. - Ailin Ren; Dachuan Zhang; Yu Tian 006; Pengli Cai; Tong Zhang; Qian-Nan Hu (Bioinform., 2021)

SARS2020: an integrated platform for identification of novel coronavirus by a consensus sequence-function model. - Dachuan Zhang; Tong Zhang; Sheng Liu; Dandan Sun; Shaozhen Ding; Xingxiang Cheng; Pengli Cai; Ailin Ren; Mengying Han; Dongliang Liu; Cancan Jia; Linlin Gong; et al. (Bioinform., 2021)

ChemHub: a knowledgebase of functional chemicals for synthetic biology studies. - Mengying Han; Dachuan Zhang; Shaozhen Ding; Yu Tian 006; Xingxiang Cheng; Le Yuan; Dandan Sun; Dongliang Liu; Linlin Gong; Cancan Jia; Pengli Cai; Weizhong Tu; et al. (Bioinform., 2021)

BioBulkFoundary: a customized webserver for exploring biosynthetic potentials of bulk chemicals. - Dandan Sun; Shaozhen Ding; Pengli Cai; Dachuan Zhang; Mengying Han; Qian-Nan Hu (Bioinform., 2022)

SynBioTools: a one-stop facility for searching and selecting synthetic biology tools. - Pengli Cai; Sheng Liu; Dachuan Zhang; Huadong Xing; Mengying Han; Dongliang Liu; Linlin Gong; Qian-Nan Hu (BMC Bioinform., 2023)

High-throughput prediction of enzyme promiscuity based on substrate-product pairs. - Huadong Xing; Pengli Cai; Dongliang Liu; Mengying Han; Juan Liu; Yingying Le; Dachuan Zhang; Qian-Nan Hu (Briefings Bioinform., 2024)