Polyploids, genome halving and phylogeny. - David Sankoff; Chunfang Zheng; Qian Zhu 002 (ISMB/ECCB (Supplement of Bioinformatics), 2007)

Parts of the Problem of Polyploids in Rearrangement Phylogeny. - Chunfang Zheng; Qian Zhu 002; David Sankoff (RECOMB-CG, 2007)

Algorithms for the Extraction of Synteny Blocks from Comparative Maps. - Vicky Choi; Chunfang Zheng; Qian Zhu 002; David Sankoff (WABI, 2007)

Removing Noise and Ambiguities from Comparative Maps in Rearrangement Analysis. - Chunfang Zheng; Qian Zhu 002; David Sankoff (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)

Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes. - Chunfang Zheng; Qian Zhu 002; Zaky Adam; David Sankoff (ISMB, 2008)

Descendants of Whole Genome Duplication within Gene Order Phylogeny. - Chunfang Zheng; Qian Zhu 002; David Sankoff (J. Comput. Biol., 2008)

Clustering for Text and Image-Based Photo Retrieval at CLEF 2009. - Qian Zhu 002; Diana Inkpen (CLEF (2), 2009)

Issues in the Reconstruction of Gene Order Evolution. - David Sankoff; Chunfang Zheng; Adriana Muñoz; Zhenyu Yang; Zaky Adam; Robert Warren; Vicky Choi; Qian Zhu 002 (J. Comput. Sci. Technol., 2009)

Generalized Gene Adjacencies, Graph Bandwidth, and Clusters in Yeast Evolution. - Qian Zhu 002; Zaky Adam; Vicky Choi; David Sankoff (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Scaffold filling, contig fusion and comparative gene order inference. - Adriana Muñoz; Chunfang Zheng; Qian Zhu 002; Victor A. Albert; Steve Rounsley; David Sankoff (BMC Bioinform., 2010)