Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies. - Young-Suk Lee; Arjun Krishnan; Qian Zhu 005; Olga G. Troyanskaya (Bioinform., 2013)

Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms. - Christopher Y. Park; Arjun Krishnan; Qian Zhu 005; Aaron K. Wong; Young-Suk Lee; Olga G. Troyanskaya (Bioinform., 2015)

Detecting gene similarities using large-scale content-based search systems - Qian Zhu 005 (2016)

A loop-counting method for covariate-corrected low-rank biclustering of gene-expression and genome-wide association study data. - Aaditya V. Rangan; Caroline C. McGrouther; John Kelsoe; Nicholas J. Schork; Eli Stahl; Qian Zhu 005; Arjun Krishnan; Vicky Yao; Olga G. Troyanskaya; Seda Bilaloglu; Preeti Raghavan; Sarah Bergen; et al. (PLoS Comput. Biol., 2018)

Subtype-specific transcriptional regulators in breast tumors subjected to genetic and epigenetic alterations. - Qian Zhu 005; Xavier Tekpli; Olga G. Troyanskaya; Vessela N. Kristensen (Bioinform., 2020)