Simplicity of Kmeans Versus Deepness of Deep Learning: A Case of Unsupervised Feature Learning with Limited Data. - Murat Dundar; Qiang Kou; Baichuan Zhang; Yicheng He; Bartek Rajwa (ICMLA, 2015)

TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and characterization. - Qiang Kou; Likun Xun; Xiaowen Liu (Bioinform., 2016)

A spectrum graph-based protein sequence filtering algorithm for proteoform identification by top-down mass spectrometry. - Runmin Yang; Daming Zhu; Qiang Kou; Poornima Bhat-Nakshatri; Harikrishna Nakshatri; Si Wu; Xiaowen Liu (BIBM, 2017)

A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra. - Qiang Kou; Si Wu; Nikola Tolic; Ljiljana Pasa-Tolic; Yunlong Liu; Xiaowen Liu (Bioinform., 2017)

Evaluation of top-down mass spectral identification with homologous protein sequences. - Ziwei Li; Bo He; Qiang Kou; Zhe Wang; Si Wu; Yunlong Liu; Weixing Feng; Xiaowen Liu (BMC Bioinform., 2018)