CNN-based two-branch multi-scale feature extraction network for retrosynthesis prediction. - Feng Yang; Juan Liu 007; Qiang Zhang 031; Zhihui Yang; Xiaolei Zhang (BMC Bioinform., 2022)

AMTL-RFC:A multi-task learning based method for evaluating the feasibility of enzymatic reactions. - Jianghang Liu; Juan Liu 007; Zhihui Yang; Feng Yang; Qiang Zhang 031 (BIBM, 2023)

SLPFA: Protein Structure-Label Embedding Attention Network for Protein Function Annotation. - Qiang Zhang 031; Juan Liu 007; Feng Yang; Zhihui Yang; Jing Feng (BIBM, 2023)

DeepRT: Predicting compounds presence in pathway modules and classifying into module classes using deep neural networks based on molecular properties. - Hayat Ali Shah; Juan Liu 007; Zhihui Yang; Feng Yang; Qiang Zhang 031; Jing Feng (J. Bioinform. Comput. Biol., 2023)

FragDPI: a novel drug-protein interaction prediction model based on fragment understanding and unified coding. - Zhihui Yang; Juan Liu 007; Xuekai Zhu; Feng Yang; Qiang Zhang 031; Hayat Ali Shah (Frontiers Comput. Sci., 2023)

Deconvolution of spatial transcriptomics data based on multi-head dynamic GAT and optimal transport. - Yuqi Chen 007; Feng Yang; Peng Jiang; Yuan Wang; Qiang Zhang 031; Juan Liu 007 (BIBM, 2024)

Subgraph-based Self-Supervised Learning Framework for Enzymatic Reaction Feasibility Prediction. - Feng Yang; Juan Liu 007; Qiang Zhang 031; Zhihui Yang; Jianghang Liu; Guangsheng Wu (BIBM, 2024)

Variable-Length Promoter Strength Prediction Based on Graph Convolution. - Tianqi Teng; Feng Yang; Qiang Zhang 031; Juan Liu 007 (ISBRA (1), 2024)

A dual-scale fused hypergraph convolution-based hyperedge prediction model for predicting missing reactions in genome-scale metabolic networks. - Weihong Huang; Feng Yang; Qiang Zhang 031; Juan Liu 007 (Briefings Bioinform., 2024)

Advancing Drug-Target Interaction prediction with BERT and subsequence embedding. - Zhihui Yang; Juan Liu 007; Feng Yang; Xiaolei Zhang; Qiang Zhang 031; Xuekai Zhu; Peng Jiang (Comput. Biol. Chem., 2024)

Planning biosynthetic pathways of target molecules based on metabolic reaction prediction and AND-OR tree search. - Xiaolei Zhang; Juan Liu 007; Feng Yang; Qiang Zhang 031; Zhihui Yang; Hayat Ali Shah (Comput. Biol. Chem., 2024)

A multi-stream network for retrosynthesis prediction. - Qiang Zhang 031; Juan Liu 007; Wen Zhang 008; Feng Yang; Zhihui Yang; Xiaolei Zhang (Frontiers Comput. Sci., 2024)