MSF-CPMP: a novel multi-source feature fusion model for prediction of cyclic peptide membrane permeability. - Zimeng Chen; Yijun Zhang; Zhuxuan Wan; Qianhui Jiang; Xiaoling Lu; Bin Yan; Jing Qin 004; Yong Liu; Junwen Wang (Briefings Bioinform., 2025)

TPepPro: a deep learning model for predicting peptide-protein interactions. - Xiaohong Jin; Zimeng Chen; Dan Yu; Qianhui Jiang; Zhuobin Chen; Bin Yan; Jing Qin 004; Yong Liu; Junwen Wang (Bioinform., 2025)

MGCL-CAP: Masked Graph Contrastive Learning with Gated Cross-Attention for Chemical Allergenicity Prediction. - Jiahui Guan; Qianhui Jiang; Peilin Xie; Xuxin He; Dan Yu; Hexian Zhang; Lantian Yao; Junwen Wang (J. Chem. Inf. Model., 2025)

DeepPTMPred: a multi-modal deep learning framework for accurate prediction of protein post-translational modification sites. - Chenkui Wang; Qianhui Jiang; Dan Yu; Jiahui Guan; Zimeng Chen; Xiaoling Lu; Bin Yan; Jing Qin 004; Yong Liu; Junwen Wang (Briefings Bioinform., 2026)