DeepAtomicCharge: a new graph convolutional network-based architecture for accurate prediction of atomic charges. - Jike Wang; Dong-Sheng Cao 001; Cunchen Tang; Lei Xu 035; Qiaojun He; Bo Yang 023; Xi Chen; Huiyong Sun; Tingjun Hou (Briefings Bioinform., 2021)

ASFP (Artificial Intelligence based Scoring Function Platform): a web server for the development of customized scoring functions. - Xujun Zhang; Chao Shen 008; Xueying Guo; Zhe Wang 041; Gaoqi Weng; Qing Ye; Gaoang Wang; Qiaojun He; Bo Yang 023; Dong-Sheng Cao 001; Tingjun Hou (J. Cheminformatics, 2021)

PROTAC-DB: an online database of PROTACs. - Gaoqi Weng; Chao Shen 008; Dong-Sheng Cao 001; Junbo Gao; Xiaowu Dong; Qiaojun He; Bo Yang 023; Dan Li 013; Jian Wu 001; Tingjun Hou (Nucleic Acids Res., 2021)

Multi-constraint molecular generation based on conditional transformer, knowledge distillation and reinforcement learning. - Jike Wang; Chang-Yu Hsieh; Mingyang Wang 004; Xiaorui Wang; Zhenxing Wu; Dejun Jiang 002; Benben Liao; Xujun Zhang; Bo Yang 023; Qiaojun He; Dongsheng Cao 001; Xi Chen; et al. (Nat. Mach. Intell., 2021)

PROTAC-DB 2.0: an updated database of PROTACs. - Gaoqi Weng; Xuanyan Cai; Dong-Sheng Cao 001; Hongyan Du; Chao Shen 008; Yafeng Deng; Qiaojun He; Bo Yang 023; Dan Li 013; Tingjun Hou (Nucleic Acids Res., 2023)

TransFoxMol: predicting molecular property with focused attention. - Jian Gao; Zheyuan Shen; Yufeng Xie; Jialiang Lu; Yang Lu; Sikang Chen; Qingyu Bian; Yue Guo; Liteng Shen; Jian Wu 001; Binbin Zhou; Tingjun Hou; et al. (Briefings Bioinform., 2023)

CovEpiAb: a comprehensive database and analysis resource for immune epitopes and antibodies of human coronaviruses. - Xue Zhang; Jingcheng Wu; Yuanyuan Luo; Yilin Wang; Yujie Wu; Xiaobin Xu; Yufang Zhang; Ruiying Kong; Ying Chi; Yisheng Sun; Shuqing Chen; Qiaojun He; et al. (Briefings Bioinform., 2024)

SynergyX: a multi-modality mutual attention network for interpretable drug synergy prediction. - Yue Guo; Haitao Hu; Wenbo Chen; Hao Yin; Jian Wu; Chang-Yu Hsieh; Qiaojun He; Ji Cao (Briefings Bioinform., 2024)