AttentionDTA: prediction of drug-target binding affinity using attention model. - Qichang Zhao; Fen Xiao; Mengyun Yang; Yaohang Li; Jianxin Wang 001 (BIBM, 2019)

A New Deep Learning Training Scheme: Application to Biomedical Data. - Jianhong Cheng; Qichang Zhao; Lei Xu; Jin Liu 012 (ISBRA, 2021)

Computational drug repositioning based on multi-similarities bilinear matrix factorization. - Mengyun Yang; Gaoyan Wu; Qichang Zhao; Yaohang Li; Jianxin Wang 001 (Briefings Bioinform., 2021)

Tracking of Aerial Cooperative Target by Satellite-Based Optical Cameras. - Qichang Zhao; Lian Chen; Houmao Wang; Yefei Li; Yubin Yuan; Yiquan Wu (IFTC, 2022)

A similarity-based deep learning approach for determining the frequencies of drug side effects. - Haochen Zhao; Shaokai Wang; Kai Zheng 020; Qichang Zhao; Feng Zhu 004; Jianxin Wang 001 (Briefings Bioinform., 2022)

NASMDR: a framework for miRNA-drug resistance prediction using efficient neural architecture search and graph isomorphism networks. - Kai Zheng 020; Haochen Zhao; Qichang Zhao; Bin Wang; Xin Gao 001; Jianxin Wang 001 (Briefings Bioinform., 2022)

IIFDTI: predicting drug-target interactions through interactive and independent features based on attention mechanism. - Zhongjian Cheng; Qichang Zhao; Yaohang Li; Jianxin Wang 001 (Bioinform., 2022)

HyperAttentionDTI: improving drug-protein interaction prediction by sequence-based deep learning with attention mechanism. - Qichang Zhao; Haochen Zhao; Kai Zheng 020; Jianxin Wang 001 (Bioinform., 2022)

DWT-CV: Dense weight transfer-based cross validation strategy for model selection in biomedical data analysis. - Jianhong Cheng; Hulin Kuang; Qichang Zhao; Yahui Wang; Lei Xu; Jin Liu 012; Jianxin Wang 001 (Future Gener. Comput. Syst., 2022)

Biomedical Data and Deep Learning Computational Models for Predicting Compound-Protein Relations. - Qichang Zhao; Mengyun Yang; Zhongjian Cheng; Yaohang Li; Jianxin Wang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

AttentionDTA: Drug-Target Binding Affinity Prediction by Sequence-Based Deep Learning With Attention Mechanism. - Qichang Zhao; Guihua Duan; Mengyun Yang; Zhongjian Cheng; Yaohang Li; Jianxin Wang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

GIFDTI: Prediction of Drug-Target Interactions Based on Global Molecular and Intermolecular Interaction Representation Learning. - Qichang Zhao; Guihua Duan; Haochen Zhao; Kai Zheng 020; Yaohang Li; Jianxin Wang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

MSDRP: a deep learning model based on multisource data for predicting drug response. - Haochen Zhao; Xiaoyu Zhang; Qichang Zhao; Yaohang Li; Jianxin Wang 001 (Bioinform., 2023)

SSLpheno: a self-supervised learning approach for gene-phenotype association prediction using protein-protein interactions and gene ontology data. - Xuehua Bi; Weiyang Liang; Qichang Zhao; Jianxin Wang 001 (Bioinform., 2023)

Cox-Path: Biological Pathway-Informed Graph Neural Network for Cancer Survival Prediction. - Teng Ma; Haochen Zhao; Qichang Zhao; Jianxin Wang 001 (BCB, 2024)

ISGDRP: a multi-modal learning method for drug response prediction. - Haochen Zhao; Xiaoyu Zhang; Qichang Zhao; Guihua Duan (BCB, 2024)

LLMDTA: Improving Cold-Start Prediction in Drug-Target Affinity with Biological LLM. - Wuguo Tang; Qichang Zhao; Jianxin Wang 001 (ISBRA (2), 2024)

FedKD-DTI: Drug-Target Interaction Prediction Based on Federated Knowledge Distillation. - Xuetao Wang; Qichang Zhao; Jianxin Wang 001 (ISBRA (2), 2024)

DDAffinity: predicting the changes in binding affinity of multiple point mutations using protein 3D structure. - Guanglei Yu; Qichang Zhao; Xuehua Bi; Jianxin Wang 001 (Bioinform., 2024)

TopoLa: a novel embedding framework for understanding complex networks. - Kai Zheng 020; Qilong Feng; Yaohang Li; Qichang Zhao; Jinhui Xu 001; Jianxin Wang 001 (CoRR, 2024)

A Knowledge Graph-Based Method for Drug-Drug Interaction Prediction With Contrastive Learning. - Jian Zhong; Haochen Zhao; Qichang Zhao; Jianxin Wang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

RGCNPPIS: A Residual Graph Convolutional Network for Protein-Protein Interaction Site Prediction. - Jian Zhong; Haochen Zhao; Qichang Zhao; Ruikang Zhou; Lishen Zhang; Fei Guo 001; Jianxin Wang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

Ship Target Detection in Optical Remote Sensing Images Based on E2YOLOX-VFL. - Qichang Zhao; Yiquan Wu; Yubin Yuan (Remote. Sens., 2024)

SGMDTI: A Unified Framework for Drug-Target Interaction Prediction by Semantic-Guided Meta-path Method. - Haoyuan Li; Haochen Zhao; Kai Zheng 020; Qichang Zhao; Guihua Duan; Jianxin Wang (ISBRA (1), 2025)

BiBLDR: Bidirectional Behavior Learning for Drug Repositioning. - Renye Zhang; Mengyun Yang; Qichang Zhao; Jianxin Wang (CoRR, 2025)