A new strategy of outlier detection for QSAR/QSPR. - Dong-Sheng Cao 001; Yi-Zeng Liang; Qing-Song Xu; Hong-Dong Li; Xian Chen (J. Comput. Chem., 2010)

Recipe for Uncovering Predictive Genes Using Support Vector Machines Based on Model Population Analysis. - Hong-Dong Li; Yi-Zeng Liang; Qing-Song Xu; Dong-Sheng Cao 001; Bin-Bin Tan; Bai-Chuan Deng; Chen-Chen Lin (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Grouping Variable Selection by Weight Fused Elastic Net for Multi-Collinear Data. - Guang-Hui Fu; Qing-Song Xu (Commun. Stat. Simul. Comput., 2012)

ChemoPy: freely available python package for computational biology and chemoinformatics. - Dong-Sheng Cao 001; Qing-Song Xu; Qian-Nan Hu; Yi-Zeng Liang (Bioinform., 2013)

propy: a tool to generate various modes of Chou's PseAAC. - Dong-Sheng Cao 001; Qing-Song Xu; Yi-Zeng Liang (Bioinform., 2013)

PyDPI: Freely Available Python Package for Chemoinformatics, Bioinformatics, and Chemogenomics Studies. - Dong-Sheng Cao 001; Yi-Zeng Liang; Jun Yan; Gui-Shan Tan; Qing-Song Xu; Shao Liu (J. Chem. Inf. Model., 2013)

Rcpi: R/Bioconductor package to generate various descriptors of proteins, compounds and their interactions. - Dong-Sheng Cao 001; Nan Xiao 002; Qing-Song Xu; Alex F. Chen (Bioinform., 2015)

protr/ProtrWeb: R package and web server for generating various numerical representation schemes of protein sequences. - Nan Xiao 002; Dong-Sheng Cao 001; Min-Feng Zhu; Qing-Song Xu (Bioinform., 2015)

REBET: a method to determine the number of cell clusters based on batch effect removal. - Zhao-Yu Fang; Cui-Xiang Lin; Yun-Pei Xu; Hong-Dong Li; Qing-Song Xu (Briefings Bioinform., 2021)