Functional similarity analysis of human virus-encoded miRNAs. - Guangchuang Yu; Qing-Yu He (J. Clin. Bioinform., 2011)

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization. - Guangchuang Yu; Li-Gen Wang; Qing-Yu He (Bioinform., 2015)

DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis. - Guangchuang Yu; Li-Gen Wang; Guang-Rong Yan; Qing-Yu He (Bioinform., 2015)