The optimized estimation of impulse response function using PSO. - Yu Zhou; Xingkui Zhao; Qingwei Ye; Qing Zhan; Haigang Hu (BIC-TA, 2010)

Improving multiple sequence alignment by using better guide trees. - Qing Zhan; Yongtao Ye; Tak Wah Lam; Siu-Ming Yiu; Yadong Wang 001; Hing-Fung Ting (BMC Bioinform., 2015)

GLProbs: Aligning Multiple Sequences Adaptively. - Yongtao Ye; David Wai-Lok Cheung; Yadong Wang 001; Siu-Ming Yiu; Qing Zhan; Tak Wah Lam; Hing-Fung Ting (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

ProbPFP: A Multiple Sequence Alignment Algorithm Combining Partition Function and Hidden Markov Model with Particle Swarm Optimization. - Qing Zhan; Nan Wang; Shuilin Jin; Renjie Tan; Qinghua Jiang; Yadong Wang (BIBM, 2018)

ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function. - Qing Zhan; Nan Wang; Shuilin Jin; Renjie Tan; Qinghua Jiang; Yadong Wang (BMC Bioinform., 2019)

ERDS-Exome: A Hybrid Approach for Copy Number Variant Detection from Whole-Exome Sequencing Data. - Renjie Tan; Jixuan Wang; Xiaoliang Wu; Liran Juan; Tianjiao Zhang; Rui Ma; Qing Zhan; Tao Wang; Shuilin Jin; Qinghua Jiang; Yadong Wang (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Ten simple rules for good model-sharing practices. - Ismael Kherroubi Garcia; Christopher Erdmann; Sandra Gesing; C. Michael Barton; Lauren Cadwallader; Geerten Hengeveld; Christine R. Kirkpatrick; Kathryn Knight; Carsten Lemmen; Rebecca Ringuette; Qing Zhan; Melissa Harrison; et al. (PLoS Comput. Biol., 2025)